Skip to content

@TIGRLab Kimel Family Translational Imaging-Genetics Research Lab

Change the repository type filter

All

    Repositories list

    85 repositories

    • tigrlab.github.io

      Public
      tigrlab website
      SCSS
      •
      MIT License
      •3•2•0•0•Updated Dec 2, 2024Dec 2, 2024

    • documentation

      Public
      TIGRLab Documentation
      7•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • SCanD_project

      Public
      base repo for the SCanD codebase - meant to be forked/cloned for every SCanD dataset
      Shell
      •
      MIT License
      •11•2•0•0•Updated Nov 13, 2024Nov 13, 2024

    • datman

      Public
      scripts for managing xnat, QC, and data analysis
      Python
      •
      Apache License 2.0
      •20•16•8•2•Updated Nov 12, 2024Nov 12, 2024

    • datman_niviz

      Public
      A datman-ized version of Jer's niviz_rater app
      Python
      •1•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • tape_scripts

      Public
      This repository holds all our tape management scripts
      Shell
      •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • fieldopt

      Public
      Python package containing Python geometry libraries for MRI mesh manipulation and mapping
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • falff_paper

      Public
      This repository contains the scripts that were utilized in the fALFF manuscript using the SPINS and SPIN-ASD data by Bagheri et al.
      Shell
      •1•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • datman-dashboard

      Public
      tigrlab dashboard development
      JavaScript
      •8•6•1•1•Updated May 6, 2024May 6, 2024

    • dmri_analyses

      Public
      Documentation for TIGRLab dMRI post-processing pipelines.
      Shell
      •2•0•0•0•Updated Apr 29, 2024Apr 29, 2024

    • BOONStim

      Public
      Bayesian Optimization of NeuroStimulation
      Nextflow
      •
      MIT License
      •4•0•0•0•Updated Mar 11, 2024Mar 11, 2024

    • SDC-BIDS-fMRI

      Public
      fMRI Imaging Analysis
      Jupyter Notebook
      •
      Other
      •39•0•0•0•Updated Dec 5, 2023Dec 5, 2023

    • dmri-microstructure

      Public
      Shell
      •
      Apache License 2.0
      •4•1•8•1•Updated Oct 17, 2023Oct 17, 2023

    • ENIGMA_DTI_BIDS

      Public
      ENIGMA DTI workflow with a bids app
      Python
      •4•1•0•0•Updated Sep 30, 2023Sep 30, 2023

    • qcmon

      Public
      qćmon: gotta check 'em all
      MATLAB
      •8•0•0•0•Updated Sep 26, 2023Sep 26, 2023

    • SCanD_project_PNC

      Public
      base repo for the SCanD codebase - meant to be folked/cloned for every SCanD dataset
      Shell
      •
      MIT License
      •11•1•0•0•Updated Sep 24, 2023Sep 24, 2023

    • TASITS_SPINS

      Public
      0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

    • napr

      Public
      A local version of the cloud-based framework for age prediction using neuroimaging
      R
      •
      Apache License 2.0
      •2•0•0•0•Updated Aug 15, 2023Aug 15, 2023

    • tractify

      Public
      Tractography pipeline for preprocessed DWIs
      Python
      •
      MIT License
      •3•7•1•2•Updated Jul 18, 2023Jul 18, 2023

    • SSD_PINT

      Public
      scripts used for analysis of PINT in SZ samples
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jun 16, 2023Jun 16, 2023

    • SCanD_project-1

      Public
      base repo for the SCanD codebase - meant to be folked/cloned for every SCanD dataset
      Shell
      •
      MIT License
      •11•0•0•0•Updated Jun 5, 2023Jun 5, 2023

    • boutiques_jsons

      Public
      Our descriptor and invocation jsons for our pipelines.
      5•0•0•1•Updated Jan 20, 2023Jan 20, 2023

    • TIGR_PURR

      Public
      TIGR PURR: TIGRLab Pipelines for Utterly Reproducible Research
      Nextflow
      •6•1•3•1•Updated Jan 20, 2023Jan 20, 2023

    • dmripreproc

      Public
      Until we come up with a better name
      Jupyter Notebook
      •
      Other
      •2•0•13•2•Updated Dec 26, 2022Dec 26, 2022

    • sgacc-targeting

      Public
      Workflow plugin for BOONStim to perform single-coordinate sgacc targeting
      Nextflow
      •0•0•0•0•Updated Dec 19, 2022Dec 19, 2022

    • brainhack-2022-scrubbing

      Public
      Testing scrubbing parameters on clinical datasets
      Jupyter Notebook
      •0•0•0•0•Updated Dec 9, 2022Dec 9, 2022

    • cymh_survey

      Public
      R
      •0•0•0•0•Updated Oct 6, 2022Oct 6, 2022

    • asl-preprocessing

      Public
      Shell
      •
      Apache License 2.0
      •3•0•0•1•Updated Aug 24, 2022Aug 24, 2022

    • nextflow-simnibs

      Public
      Automated simulations and surface mapping for SimNIBS
      Nextflow
      •1•0•0•0•Updated Jun 14, 2022Jun 14, 2022

    • air-tigrs

      Public
      Orchestration tools for TIGRLab's data management infrastructure
      Python
      •5•1•12•3•Updated Apr 28, 2022Apr 28, 2022