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    • stringApp

      Public
      Cytoscape interface to STRING and STITCH
      Java
      BSD 2-Clause "Simplified" License
      1110100Updated Dec 24, 2024Dec 24, 2024
    • ChimeraX

      Public
      Source code for molecular graphics program UCSF ChimeraX
      Python
      Other
      3216430Updated Dec 23, 2024Dec 23, 2024
    • LookSee

      Public
      LookSee molecular viewer for Quest VR headsets
      C#
      02100Updated Nov 25, 2024Nov 25, 2024
    • Python
      21000Updated Nov 21, 2024Nov 21, 2024
    • Interface between ChimeraX and Schol-AR. Allows for creating and editing Schol-Ar projects and augmentations inside of ChimeraX.
      Python
      1000Updated Nov 14, 2024Nov 14, 2024
    • chemViz2

      Public
      Cheminformatics App for Cytoscape 3
      Java
      4651Updated Nov 2, 2024Nov 2, 2024
    • Key frame animation app for Cytoscape
      Java
      3430Updated Oct 24, 2024Oct 24, 2024
    • localizer

      Public
      Java
      1000Updated Oct 24, 2024Oct 24, 2024
    • Makefile
      1100Updated Sep 28, 2024Sep 28, 2024
    • A ChimeraX bundle for medical imaging, intended for research purposes only
      0000Updated Sep 17, 2024Sep 17, 2024
    • readcif

      Public
      A fast C++ CIF and mmCIF parser
      C++
      Other
      3800Updated Sep 16, 2024Sep 16, 2024
    • appstore

      Public
      Cytoscape App Store web application code
      Python
      20000Updated Sep 10, 2024Sep 10, 2024
    • Limit access to mail submission port to dovecot users using firewalld
      Python
      0000Updated Aug 30, 2024Aug 30, 2024
    • SPOKEApp

      Public
      Cytoscape interface to SPOKE
      Java
      0000Updated Jul 19, 2024Jul 19, 2024
    • CyPlot

      Public
      Java
      3320Updated Jun 5, 2024Jun 5, 2024
    • scNetViz

      Public
      Single-Cell RNA Seq analysis and visualization package for Cytoscape
      Java
      Apache License 2.0
      65122Updated May 3, 2024May 3, 2024
    • ppeclient

      Public
      Python client for Proofpoint Essentials
      Makefile
      0000Updated Aug 15, 2023Aug 15, 2023
    • Cytoscape 3 Clustering App
      Java
      14883Updated Jun 16, 2023Jun 16, 2023
    • Simple, modern & fast web-based email client
      PHP
      MIT License
      899000Updated Mar 9, 2023Mar 9, 2023
    • Java
      1000Updated Jan 6, 2023Jan 6, 2023
    • A template repository for prospective bundle developers
      Makefile
      1000Updated Oct 6, 2022Oct 6, 2022
    • minrms

      Public
      A bioinformatics algorithm for generating sequence alignments from 3D structures
      C++
      Other
      1310Updated Feb 22, 2022Feb 22, 2022
    • A sample implementation of the Cytoscape jobs-api that mocks up a remote cluster service.
      Java
      1101Updated Jun 4, 2021Jun 4, 2021
    • structureViz for ChimeraX
      Java
      1201Updated Jun 4, 2021Jun 4, 2021
    • App to add enhanced node graphics to Cytoscape 3
      Java
      5720Updated Mar 31, 2021Mar 31, 2021
    • Python
      1100Updated Jan 26, 2021Jan 26, 2021
    • REST-API

      Public
      Python
      1000Updated Jun 8, 2020Jun 8, 2020
    • Java
      0000Updated May 12, 2020May 12, 2020
    • MSWeb

      Public
      JavaScript
      0100Updated Aug 12, 2019Aug 12, 2019
    • StEMAPApp

      Public
      Cytoscape App to interactively explore structural EMAPs
      Java
      2000Updated Jul 1, 2019Jul 1, 2019