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    • Plugin repository for PathVisio
      HTML
      Apache License 2.0
      0000Updated Nov 28, 2024Nov 28, 2024
    • pathvisio

      Public
      PathVisio - pathway editor, visualization and analysis software
      Java
      Apache License 2.0
      2123950Updated Oct 3, 2024Oct 3, 2024
    • PathVisio website and tutorials (under development)
      HTML
      MIT License
      4082Updated Sep 3, 2024Sep 3, 2024
    • 📖 PathVisio
      HTML
      Creative Commons Zero v1.0 Universal
      3300Updated Jan 15, 2024Jan 15, 2024
    • libGPML

      Public
      Java library for reading / writing GPML files
      Java
      Apache License 2.0
      4250Updated Oct 14, 2023Oct 14, 2023
    • Java
      Apache License 2.0
      30190Updated Jan 27, 2023Jan 27, 2023
    • libGPML Java documentation
      HTML
      0000Updated Aug 27, 2022Aug 27, 2022
    • PathVisioRPC is an XML-RPC implementation of PathVisio that allows users to create and edit biological pathways, visualize data on pathways, perform pathway statistics and exports results in various image formats. Since most major programming languages have a library/module providing XML-RPC functionality, this application enables users to acces…
      Java
      5861Updated Apr 1, 2022Apr 1, 2022
    • GPML Homology Mapper
      Java
      Apache License 2.0
      2010Updated Mar 29, 2022Mar 29, 2022
    • Java
      Apache License 2.0
      0000Updated Dec 2, 2021Dec 2, 2021
    • BH2021

      Public
      MIT License
      0000Updated Nov 11, 2021Nov 11, 2021
    • GPML

      Public
      Graphical Pathway Markup Language
      Python
      3590Updated Oct 21, 2021Oct 21, 2021
    • 0000Updated Sep 28, 2021Sep 28, 2021
    • WP-plugin

      Public
      Plugin for PathVisio that provides a WikiPathways client.
      Java
      Apache License 2.0
      51103Updated Mar 31, 2020Mar 31, 2020
    • GO-plugin

      Public
      Java
      Apache License 2.0
      0000Updated May 1, 2019May 1, 2019
    • R package for PathVisioRPC
      R
      4220Updated Apr 1, 2019Apr 1, 2019
    • tutorials

      Public
      Tutorials and workshop material for PathVisio
      3000Updated Oct 8, 2018Oct 8, 2018
    • Enables the conversion of pathway elements into other types (e.g. Label into Metabolite)
      Java
      Apache License 2.0
      1151Updated Apr 25, 2018Apr 25, 2018
    • PathVisio plugin to find relevant metabolic reactions from Rhea
      Java
      Apache License 2.0
      1110Updated Apr 25, 2018Apr 25, 2018
    • GSEA plugin for PathVisio
      Java
      1010Updated Dec 18, 2017Dec 18, 2017
    • library to read/write GPML
      Java
      Apache License 2.0
      4050Updated Aug 24, 2017Aug 24, 2017
    • PathwayLoom plugin for PathVisio
      Java
      Apache License 2.0
      1000Updated Feb 14, 2017Feb 14, 2017
    • Tissue Analyser Plugin
      Java
      1090Updated Jul 27, 2016Jul 27, 2016
    • MAPPBuilder plugin for PathVisio
      Java
      Apache License 2.0
      2050Updated Mar 8, 2016Mar 8, 2016
    • Visualize regulatory interactions in the side panel of PathVisio
      Java
      Apache License 2.0
      1100Updated Dec 18, 2015Dec 18, 2015
    • PathVisio plugin to import and export pathways in BioPAX format
      Web Ontology Language
      Apache License 2.0
      3110Updated Apr 23, 2015Apr 23, 2015
    • MiPaSt

      Public
      miRNA pathway statistics plugin for PathVisio
      Java
      Apache License 2.0
      0000Updated Apr 13, 2015Apr 13, 2015
    • Plugin for PathVisio that adds a MiniMap side panel for navigation in large pathways
      1000Updated Sep 6, 2013Sep 6, 2013