LREN CHUV

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87 repositories

data-db-setup
Public
Setup for the database containing features data
docker-image database-migrations reference-data
Java
•
Apache License 2.0
•1•1•1•35•Updated Dec 26, 2024Dec 26, 2024
mip-communication-website
Public
JavaScript
•1•0•0•66•Updated Dec 14, 2024Dec 14, 2024
dev-setup
Public
infrastructure
Shell
•
Apache License 2.0
•1•0•2•15•Updated Dec 10, 2024Dec 10, 2024
ansible-airflow
Public
Ansible role for the installation of Apache Airflow
infrastructure ansible-role airflow
Python
•
MIT License
•7•18•0•28•Updated Dec 9, 2024Dec 9, 2024
maracker
Public
API aiming to make Human Brain Project's Medical Informatics Platform's developped apps deployment on Mesos Marathon easier.
Python
•2•0•0•48•Updated Dec 7, 2024Dec 7, 2024
mip-microservices-infrastructure
Public
Generic version of the scripts used to deploy the Medical Informatics Platform
marathon mesos infrastructure-as-code ansible-roles humanbrainproject infrastructure hbp medical-informatics-platform
Shell
•
Apache License 2.0
•9•1•19•12•Updated Dec 6, 2024Dec 6, 2024
portal-backend
Public
Backend for the MIP portal
server docker-image web-analytics
Java
•
Other
•1•2•3•79•Updated Nov 20, 2024Nov 20, 2024
chronos
Public
Fault tolerant job scheduler for Mesos which handles dependencies and ISO8601 based schedules
Scala
•
Apache License 2.0
•529•0•0•20•Updated Nov 16, 2024Nov 16, 2024
mip-sdm
Public
Software Delivery Machine for MIP
infrastructure atomist
TypeScript
•
Apache License 2.0
•1•0•4•131•Updated Nov 8, 2024Nov 8, 2024
java-base-docker-images
Public
Collection of Docker images for Java, including the base images created for the Algorithm Factory / Woken
docker-images algorithm-factory
Java
•
Apache License 2.0
•2•0•2•73•Updated Oct 4, 2024Oct 4, 2024
algorithm-repository
Public
Repository of functions or algorithms packaged (with Docker) for Algorithm Factory/Woken
analytics algorithm-library docker-images pfa-standard
Python
•10•3•3•263•Updated Oct 2, 2024Oct 2, 2024
python-base-docker-images
Public
Collection of Docker images for Python, including the base images created for the Algorithm Factory / Woken
algorithm-factory docker-image
Python
•
Apache License 2.0
•5•4•3•86•Updated Sep 17, 2024Sep 17, 2024
portal-frontend
Public
Frontend for the MIP portal
server docker-image
TypeScript
•
Other
•1•0•0•21•Updated Sep 11, 2024Sep 11, 2024
woken-validation
Public
Cross-validation module for Woken, using Spark and PFA
data-mining scala pfa-standard algorithm-factory
Scala
•
GNU Affero General Public License v3.0
•7•2•2•78•Updated Aug 12, 2024Aug 12, 2024
woken-messages
Public
Shared library containing the API and messages used in Woken applications
data-mining scala algorithm-factory
Scala
•
Other
•3•1•2•69•Updated Aug 12, 2024Aug 12, 2024
woken
Public
An orchestration platform for Docker containers running data mining algorithms
data-mining scala cluster faas pfa-standard algorithm-factory mesos
Scala
•
Other
•9•11•15•133•Updated Aug 12, 2024Aug 12, 2024
data-factory-airflow-dags
Public
DAGs adapting the MRI preprocessing pipeline to Airflow
neuroimaging airflow mri nifti data-factory
Python
•
Apache License 2.0
•1•2•2•18•Updated Jul 16, 2024Jul 16, 2024
airflow-imaging-plugins
Public
Set of plugins helping to work with imaging data in Airflow.
neuroscience mri neuroimaging data-factory airflow spm
Python
•
Apache License 2.0
•2•15•2•3•Updated Jul 10, 2024Jul 10, 2024
data-tracking
Public
This project contains scripts to extract metadata from DICOM files, NIFTI files and spreadsheets, and import them into a database.
data-factory python dicom nifti
Python
•
Apache License 2.0
•2•4•0•3•Updated Jul 10, 2024Jul 10, 2024
i2b2-flattening
Public
Generate a flat CSV file from an I2B2 data (containing brain features, demographic data, etc).
data-factory
Python
•
Apache License 2.0
•1•0•0•14•Updated Jul 10, 2024Jul 10, 2024
i2b2-import
Public
This library provides functions to import data into an I2B2 DB schema
pytthon-3 data-factory i2b2
Python
•
Apache License 2.0
•2•1•0•4•Updated Jul 10, 2024Jul 10, 2024
ehr-to-i2b2
Public
Import EHR data to I2B2.
etl docker-image data-factory i2b2
Python
•
Apache License 2.0
•2•0•2•14•Updated Nov 14, 2023Nov 14, 2023
nmm-pipeline-output-merge
Public
Merge individual MIP formatted output from the NMM pipeline into one single CSV file.
data-factory
Python
•1•0•0•10•Updated Feb 15, 2023Feb 15, 2023
pfa-validator
Public
Validation of the PFA model and its predictive algorithm
testing docker-image pfa-standard algorithm-factory
Python
•
Apache License 2.0
•2•2•1•10•Updated Feb 15, 2023Feb 15, 2023
mip-brain-insights
Public
A brain atlas viewer with region-specific data
JavaScript
•2•0•0•1•Updated Dec 16, 2021Dec 16, 2021
MSPM
Public
Mass Multivariate methods for neurimaging data
MATLAB
•
GNU General Public License v3.0
•1•2•2•0•Updated Aug 12, 2021Aug 12, 2021
web-analytics-demo
Public
Launch the MIP web-analytics components using docker-compose
web-analytics
Shell
•0•0•1•2•Updated Jan 16, 2021Jan 16, 2021
MLM
Public
Mulivariate analysis for Neuroimaging data.
HTML
•0•2•0•0•Updated May 6, 2020May 6, 2020
Neuro_Atlasing
Public
Matlab script for the segmentation of individual T1w images into brain regions defined by SPM12 Neuromephometric atlas.
MATLAB
•0•0•0•0•Updated Mar 22, 2020Mar 22, 2020
mip-cde-meta-db-setup
Public
Meta DB setup based on our selection of common variables (MIP CDE)
docker-image database-migrations reference-data
Shell
•
Apache License 2.0
•2•0•1•1•Updated Mar 9, 2020Mar 9, 2020