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    18 repositories

    • ProDiel

      Public
      targeted metabolomics data for Prochlorococcus grown under diel light cycles
      0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • SkyMat

      Public
      The Kuj Lab needs a new pipeline, specifically for processing data from the metabolite benzoylation and measurement procedure described in Widner et al. (2021).
      MATLAB
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • UntargCode

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Sep 21, 2024Sep 21, 2024

    • domdb

      Public
      DOM mass spec database prototype
      Python
      •
      MIT License
      •3•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • findformula

      Public
      MATLAB code to calculate elemental formulas from ultrahigh resolution mass spectrometry data
      MATLAB
      •
      MIT License
      •3•0•0•0•Updated Aug 14, 2024Aug 14, 2024

    • .github

      Public
      Setting up a place for the organization .readme
      0•0•0•0•Updated Apr 12, 2024Apr 12, 2024

    • BIOSSCOPE_targetedMtabs

      Public
      link targeted metabolites with discrete data
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Apr 12, 2024Apr 12, 2024

    • NEplants

      Public
      plant project with Northeastern University
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Dec 6, 2023Dec 6, 2023

    • Pro_mtabs

      Public
      targeted metabolomics data for multiple strains of Prochlorococccus
      Jupyter Notebook
      •1•0•0•0•Updated Oct 13, 2023Oct 13, 2023

    • metaboliteMath

      Public
      Use to count pathways and reactions for metabolites
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • DilutionExperiment

      Public
      1•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • Tricho

      Public
      Tricho project for Rules project
      R
      •
      MIT License
      •1•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • CMP017

      Public
      repository for code to process CMP017 samples for C-CoMP
      R
      •
      MIT License
      •2•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • Lumos_MSn

      Public
      R code to test fragmentation parameters on the Lumos
      R
      •
      MIT License
      •1•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • NPOCandTNfromShimadzu

      Public
      MATLAB code to process NPOC and TN data from a Shimadzu TOC/TN instrument
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Jan 23, 2023Jan 23, 2023

    • queryMetaboLights

      Public
      R code to query Kujawinski lab data repositories at MetaboLights
      R
      •
      MIT License
      •1•0•0•0•Updated Aug 22, 2022Aug 22, 2022

    • Autotuner

      Public
      This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics data processing.
      R
      •
      MIT License
      •8•16•5•0•Updated Jan 21, 2021Jan 21, 2021

    • NB_Distribution

      Public
      Linking CO and KOs in RI
      Jupyter Notebook
      •3•0•0•0•Updated Sep 16, 2016Sep 16, 2016