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@FAANG The Functional Annotation of Animal Genomes (FAANG)

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    40 repositories

    • comm-data-portal-projects

      Public
      Repository to capture FAANG project information and images for project specific pages on FAANG data portal.
      Apache License 2.0
      •2•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • angular_skeleton

      Public
      TypeScript
      •1•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • dcc-validate-metadata

      Public
      Validate the metadata complies with a set of rules
      Python
      •0•4•0•9•Updated Oct 16, 2024Oct 16, 2024

    • dcc-documentation

      Public
      0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • dcc-portal-frontend

      Public
      This code supports the frontend operations of the FAANG data portal
      TypeScript
      •
      Apache License 2.0
      •2•3•0•4•Updated Sep 2, 2024Sep 2, 2024

    • dcc-portal-frontend-ssr

      Public
      Latest FAANG version in Angular 18 and with SSR
      TypeScript
      •0•0•0•0•Updated Aug 27, 2024Aug 27, 2024

    • dcc-eurofaang-ri-fe

      Public
      TypeScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

    • dcc-eurofaang-ri-be

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

    • analysis-TAGADA

      Public
      GENE-SWitCH project RNA-Seq analysis pipeline
      Nextflow
      •
      Apache License 2.0
      •5•24•0•1•Updated May 19, 2024May 19, 2024

    • dcc-metadata

      Public
      This repo contains the faang metadata schema and associated tools
      faangmetadata-standards
      Python
      •
      Apache License 2.0
      •7•8•0•1•Updated Mar 6, 2024Mar 6, 2024

    • fastocc

      Public
      Python
      •
      Apache License 2.0
      •1•5•0•0•Updated Jan 25, 2024Jan 25, 2024

    • dcc-dev-environment

      Public
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•1•Updated Nov 28, 2023Nov 28, 2023

    • dcc-portal-backend

      Public
      This code supports the backend operations of the FAANG data portal
      Python
      •
      Apache License 2.0
      •1•1•0•7•Updated Oct 18, 2023Oct 18, 2023

    • dcc-ena-submissions-frontend

      Public
      TypeScript
      •0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

    • dcc-kubernetes-configs

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•3•Updated Jun 20, 2023Jun 20, 2023

    • ATAC-training-Apr-2023

      Public
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 20, 2023Apr 20, 2023

    • dcc-bulk-data-downloader

      Public
      Python
      •0•0•0•0•Updated Mar 29, 2023Mar 29, 2023

    • BayesRCO

      Public
      A software package that includes BayesCpi, BayesR, BayesRC, and two extensions of BayesRC to overlapping data: BayesRC+ and BayesRCpi
      Fortran
      •1•11•1•0•Updated Feb 28, 2023Feb 28, 2023

    • ATAC-training-Feb-2023

      Public
      R
      •
      Apache License 2.0
      •0•1•0•0•Updated Feb 1, 2023Feb 1, 2023

    • GSOC-dcc-validate-metadata

      Public
      Minimalist version of dcc_validate_metadata
      Python
      •0•0•0•1•Updated Sep 15, 2022Sep 15, 2022

    • dcc-query-api

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 5, 2022Aug 5, 2022

    • analysis-hic

      Public
      Analysis of Chromosome Conformation Capture data (Hi-C)
      Python
      •
      MIT License
      •55•0•0•0•Updated Jul 28, 2022Jul 28, 2022

    • eurofaang-certificate-renewal-cronjob

      Public
      Cronjob to renew Eurofaang certificate and copy the TLS secret to the correct namespace
      Python
      •0•0•0•0•Updated Jul 18, 2022Jul 18, 2022

    • analysis-atacseq

      Public
      ATAC-seq peak-calling, QC and differential analysis pipeline
      Nextflow
      •
      MIT License
      •119•0•0•0•Updated Jul 12, 2022Jul 12, 2022

    • ensembl-annotation-cronjob

      Public
      Python script (web scraping) running as a cron job to load the ensembl-annotation index
      Python
      •0•0•0•0•Updated Jul 12, 2022Jul 12, 2022

    • analysis-isoseq

      Public
      GENE-SWitCH project Iso-Seq analysis pipeline
      Groovy
      •
      MIT License
      •3•0•0•0•Updated Jul 6, 2022Jul 6, 2022

    • eurofaang-frontend

      Public
      HTML
      •0•0•0•0•Updated May 6, 2022May 6, 2022

    • GSM-pipeline

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Feb 16, 2022Feb 16, 2022

    • bedToBigBed

      Public
      Python script to convert CAGE BED files to BigBed format
      Python
      •0•0•0•0•Updated Nov 18, 2021Nov 18, 2021

    • dcc-portal-proxy

      Public
      FAANG portal python proxy
      Python
      •
      Apache License 2.0
      •1•0•0•4•Updated Sep 29, 2021Sep 29, 2021