Thursday pending

Switched designation to confirmatory for list of samples for NYS as requested

datasets/analysis_dataset.csv

@@ -4,8 +4,8 @@ sampleid,program,location,county,state,full_state,date_collect,sampletype,collec
 "196","redacted","Asheville","Buncombe County","NC","North Carolina",23Nov2022,"cotton","cotton",1,"methamphetamine",0,0,0,1,0,1,0,0,0,"",0,"",,,,,,,"normal","normal",,,,,,,,,,"","","not overdose related","not involved","",,0,01Dec2022,1,0,,1,1,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,"Buncombe County",35.6009498,-82.5540161,"35.6009498","-82.5540161","NC | BUNCOMBE","37","021","37021"
 "473","redacted","Hickory","Catawba County","NC","North Carolina",01May2022,"syringe","syringe",1,"heroin; fentanyl",1,1,0,0,0,0,0,0,0,"clear",0,"powder",,,1,,,,"weird",,1,,,,,,,,,"heroin from powder","Ostensibly fentanyl. Thinks not but very weird","unknown",,"",,0,02Jun2022,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,"Catawba County",35.7333312,-81.3442915,"35.7333312","-81.3442915","NC | CATAWBA","37","035","37035"
 "368","redacted","Gastonia","Gaston County","NC","North Carolina",01Aug2022,"unknown","unknown",1,"fentanyl",1,1,0,0,0,0,0,0,0,"tan",0,"powder; chunky",,,1,,,,"normal","normal",,,,,,,,,,"","different color than usual","not overdose related","not involved","",,0,14Sep2022,1,1,,15,3,1,1,1,1,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,1,1,0,1,0,0,"Catawba County",35.7333312,-81.3442915,"35.2622654","-81.1838186","NC | GASTON","37","071","37071"
-"424","redacted","Greensboro","Guilford County","NC","North Carolina",15Oct2021,"spatula","spatula",0,"heroin; fentanyl",1,1,0,0,0,0,0,0,0,"white",0,"powder",,,1,,,,"",,,,,,,,,,,"","","unknown",,"",,0,11Feb2022,1,0,,7,7,1,1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,"Guilford County",36.0726355,-79.7919754,"36.0726355","-79.7919754","NC | GUILFORD","37","081","37081"
 "280","redacted","Greensboro","Guilford County","NC","North Carolina",20May2022,"pill","pill",0,"MDMA",0,0,0,0,0,0,0,0,1,"blue",1,"pill",,1,,,,,"",,,,,,,,,,,"","?","not overdose related","not involved","",,0,09Jun2022,1,1,,3,1,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,1,"Guilford County",36.0726355,-79.7919754,"36.0726355","-79.7919754","NC | GUILFORD","37","081","37081"
+"424","redacted","Greensboro","Guilford County","NC","North Carolina",15Oct2021,"spatula","spatula",0,"heroin; fentanyl",1,1,0,0,0,0,0,0,0,"white",0,"powder",,,1,,,,"",,,,,,,,,,,"","","unknown",,"",,0,11Feb2022,1,0,,7,7,1,1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,"Guilford County",36.0726355,-79.7919754,"36.0726355","-79.7919754","NC | GUILFORD","37","081","37081"
 "437","redacted","Pitt County","Pitt County","NC","North Carolina",01Oct2022,"swab","swab",0,"unknown",0,0,0,0,0,0,0,0,0,"unknown",1,"powder",,,1,,,,"",,,,,,,,,,,"","","not overdose related","not involved","",,0,11Oct2022,1,1,,3,2,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,"Pitt County",35.613224,-77.3724593,"35.611481","-77.3707461","NC | PITT","37","147","37147"
 "701","redacted","Asheboro","Randolph County","NC","North Carolina",02Nov2022,"swab","swab",1,"heroin; fentanyl",1,1,0,0,0,0,0,0,0,"white",0,"powder",,,1,,,,"normal; stronger","stronger",,,,,,,,,,"","","not overdose related","not involved","",,0,29Nov2022,1,1,,9,4,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,"Randolph County",35.7079146,-79.8136446,"35.7079146","-79.8136446","NC | RANDOLPH","37","151","37151"
 "101","redacted","Raleigh","Wake County","NC","North Carolina",15Apr2022,"unknown","unknown",1,"MDMA",0,0,0,0,0,0,0,0,1,"brown",0,"powder; chunky",,,1,,,,"weird",,1,,,,,,,,,"","","not overdose related","not involved","",,0,04Aug2022,1,1,,2,1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,"Guilford County",36.0726355,-79.7919754,"35.7803977","-78.6390989","NC | WAKE","37","183","37183"

datasets/code/Streamlit/x_subs.csv

@@ -21,67 +21,67 @@ substance,samples,rank
 "diphenhydramine",24,20
 "tramadol",24,21
 "procaine",20,22
-"quinine",17,23
-"non-specific sugars",17,24
+"non-specific sugars",17,23
+"quinine",17,24
 "phenethyl bromide",14,25
 "bromazolam",12,26
 "1-phenethyl-4-propionyloxypiperidine",11,27
 "N-butyl-aniline",11,28
-"menthol",9,29
-"mannitol",9,30
-"papaverine",7,31
-"medetomidine",7,32
+"mannitol",9,29
+"menthol",9,30
+"medetomidine",7,31
+"papaverine",7,32
 "bis(2,2,6,6-tetramethyl-4-piperidyl) sebacate",7,33
 "despropionyl ortho-methylfentanyl",6,34
 "methyl ecgonidine (MED)",6,35
-"1-phenyl-1-propanamine",5,36
+"N-propionyl norfentanyl",5,36
 "gabapentin",5,37
-"N-propionyl norfentanyl",5,38
-"metonitazene",4,39
-"phenacetin",4,40
-"benzocaine",4,41
-"tiletamine",4,42
-"2-Fluoro-2-oxo PCE",4,43
-"4-anilinopiperidine",4,44
-"ortho-methylfentanyl",4,45
-"erythritol",4,46
-"xylitol",3,47
-"non-specific sugar",3,48
-"acetyl fentanyl",3,49
-"melatonin",3,50
-"tropacocaine",3,51
-"N-phenethyl-N-phenylpropionamide",3,52
-"sucrose",2,53
-"delta-9-THC",2,54
-"levamisole",2,55
-"inositol",2,56
-"4-Anilino-1-Boc-piperidine",2,57
-"N,N-dimethylpentylone",2,58
-"non-specific phthalate",2,59
-"benzyl benzoate",2,60
-"hydrocotarnine",2,61
-"valeryl fentanyl",2,62
-"ketamine",2,63
-"phenethyl chloride",2,64
+"1-phenyl-1-propanamine",5,38
+"ortho-methylfentanyl",4,39
+"4-anilinopiperidine",4,40
+"tiletamine",4,41
+"erythritol",4,42
+"phenacetin",4,43
+"benzocaine",4,44
+"2-Fluoro-2-oxo PCE",4,45
+"metonitazene",4,46
+"tropacocaine",3,47
+"melatonin",3,48
+"N-phenethyl-N-phenylpropionamide",3,49
+"acetyl fentanyl",3,50
+"xylitol",3,51
+"non-specific sugar",3,52
+"urea",2,53
+"ketamine",2,54
+"delta-9-THC",2,55
+"N,N-dimethylpentylone",2,56
+"1-propionyl-4-anilinopiperidine",2,57
+"levamisole",2,58
+"4-Anilino-1-Boc-piperidine",2,59
+"valeryl fentanyl",2,60
+"inositol",2,61
+"hydrocotarnine",2,62
+"phenethyl chloride",2,63
+"non-specific phthalate",2,64
 "benzoylecgonine (BZ)",2,65
 "meconin",2,66
-"urea",2,67
-"1-propionyl-4-anilinopiperidine",2,68
-"eutylone",1,69
-"methylparaben",1,70
-"norcocaine",1,71
-"flualprazolam",1,72
+"benzyl benzoate",2,67
+"sucrose",2,68
+"naproxen",1,69
+"non-specific organic acids",1,70
+"ibuprofen",1,71
+"eutylone",1,72
 "p-fluoroacetyl fentanyl",1,73
-"benzoic acid",1,74
-"ibuprofen",1,75
-"protonitazene",1,76
-"niacinamide",1,77
-"lactose",1,78
-"1-phenethyl-4-hydroxypiperidine",1,79
+"norcocaine",1,74
+"benzoic acid",1,75
+"1-phenethyl-4-hydroxypiperidine",1,76
+"ecgonine methylester (EME)",1,77
+"PMK ethyl glycidate",1,78
+"noscapine",1,79
 "nicotine",1,80
-"naproxen",1,81
-"PMK ethyl glycidate",1,82
-"tetracaine",1,83
-"noscapine",1,84
-"ecgonine methylester (EME)",1,85
-"non-specific organic acids",1,86
+"tetracaine",1,81
+"protonitazene",1,82
+"methylparaben",1,83
+"flualprazolam",1,84
+"niacinamide",1,85
+"lactose",1,86

datasets/code/completed.csv

@@ -1,4 +1,18 @@
 title
+"807983"
+"807370"
+"807369"
+"807367"
+"807103"
+"807084"
+"807013"
+"807010"
+"805458"
+"805100"
+"804967"
+"804811"
+"804752"
+"602028"
 "807374"
 "903171"
 "807375"

datasets/code/result_processing.do

@@ -363,6 +363,11 @@ replace confirmatory=1 if regexm(sampleid,"300555|300561|300572|300577|300593|30
 replace confirmatory=1 if regexm(sampleid,"300851|300839300848|300831|300821|300810|300878|300873|300887|300885|300672|300613|300644|300674|300736|300382|300804|300807|300839|300840|300880|300902|300916|300920|300921|300926|300931|300934|300935|300937|300938|300940|300947|300948|300949|300951|300958|300960|300961|300964|900047|900055|900065|900066|900081|600528|600514")
 ******* Errors found by Cole in June 2024
 replace confirmatory=1 if regexm(sampleid, "500732|500254|500405|500543|500931|500001|500935|500732")
+
+******* Requested by Emily Payne Oct 2024
+replace confirmatory=1 if regexm(sampleid, "600539|600541|600555|600557|600559|600562|600564|600565|600569|600577")
+
+
 ******* Add NC Survivors Union to confirmatory going forward
 do "/Users/nabarun/Documents/dc_internal/confirmatory_program_switch.do"