HRGs split into 4

analysis/study_definition_2017_ckd_hrg1.py

@@ -0,0 +1,33 @@
+from cohortextractor import (
+    StudyDefinition,
+    Measure,
+    patients,
+    codelist_from_csv,
+    codelist,
+    filter_codes_by_category,
+    combine_codelists
+)
+
+from codelists import *
+
+CKD = "output/2017_ckd.csv"
+
+from variables_additional import generate_variables_additional
+variables_additional= generate_variables_additional(index_date_variable="index_date")
+
+from variables_hrg1 import generate_variables_hrg1
+variables_hrg1= generate_variables_hrg1(index_date_variable="index_date")
+
+
+study = StudyDefinition(
+    default_expectations={
+        "date": {"earliest": "2017-04-01", "latest": "2018-03-31"},
+        "rate": "uniform",
+        "incidence" : 0.2
+    },
+    population=patients.which_exist_in_file(CKD), 
+    index_date="2017-04-01",
+
+    **variables_additional,
+    **variables_hrg1,
+) 

analysis/study_definition_2017_ckd_hrg2.py

@@ -0,0 +1,33 @@
+from cohortextractor import (
+    StudyDefinition,
+    Measure,
+    patients,
+    codelist_from_csv,
+    codelist,
+    filter_codes_by_category,
+    combine_codelists
+)
+
+from codelists import *
+
+CKD = "output/2017_ckd.csv"
+
+from variables_additional import generate_variables_additional
+variables_additional= generate_variables_additional(index_date_variable="index_date")
+
+from variables_hrg2 import generate_variables_hrg2
+variables_hrg2= generate_variables_hrg2(index_date_variable="index_date")
+
+
+study = StudyDefinition(
+    default_expectations={
+        "date": {"earliest": "2017-04-01", "latest": "2018-03-31"},
+        "rate": "uniform",
+        "incidence" : 0.2
+    },
+    population=patients.which_exist_in_file(CKD), 
+    index_date="2017-04-01",
+
+    **variables_additional,
+    **variables_hrg2,
+) 

analysis/study_definition_2017_ckd_hrg3.py

@@ -0,0 +1,33 @@
+from cohortextractor import (
+    StudyDefinition,
+    Measure,
+    patients,
+    codelist_from_csv,
+    codelist,
+    filter_codes_by_category,
+    combine_codelists
+)
+
+from codelists import *
+
+CKD = "output/2017_ckd.csv"
+
+from variables_additional import generate_variables_additional
+variables_additional= generate_variables_additional(index_date_variable="index_date")
+
+from variables_hrg3 import generate_variables_hrg3
+variables_hrg3= generate_variables_hrg3(index_date_variable="index_date")
+
+
+study = StudyDefinition(
+    default_expectations={
+        "date": {"earliest": "2017-04-01", "latest": "2018-03-31"},
+        "rate": "uniform",
+        "incidence" : 0.2
+    },
+    population=patients.which_exist_in_file(CKD), 
+    index_date="2017-04-01",
+
+    **variables_additional,
+    **variables_hrg3,
+) 

analysis/study_definition_2017_ckd_hrg4.py

@@ -0,0 +1,33 @@
+from cohortextractor import (
+    StudyDefinition,
+    Measure,
+    patients,
+    codelist_from_csv,
+    codelist,
+    filter_codes_by_category,
+    combine_codelists
+)
+
+from codelists import *
+
+CKD = "output/2017_ckd.csv"
+
+from variables_additional import generate_variables_additional
+variables_additional= generate_variables_additional(index_date_variable="index_date")
+
+from variables_hrg4 import generate_variables_hrg4
+variables_hrg4= generate_variables_hrg4(index_date_variable="index_date")
+
+
+study = StudyDefinition(
+    default_expectations={
+        "date": {"earliest": "2017-04-01", "latest": "2018-03-31"},
+        "rate": "uniform",
+        "incidence" : 0.2
+    },
+    population=patients.which_exist_in_file(CKD), 
+    index_date="2017-04-01",
+
+    **variables_additional,
+    **variables_hrg4,
+) 

analysis/study_definition_2017_nockd_hrg1.py

@@ -0,0 +1,33 @@
+
+from cohortextractor import (
+    StudyDefinition,
+    Measure,
+    patients,
+    codelist_from_csv,
+    codelist,
+    filter_codes_by_category,
+    combine_codelists
+)
+
+from codelists import *
+
+NOCKD = "output/2017_nockd.csv"
+
+from variables_nockd import generate_variables_nockd
+variables_nockd= generate_variables_nockd(index_date_variable="index_date")
+
+from variables_hrg1 import generate_variables_hrg1
+variables_hrg1= generate_variables_hrg1(index_date_variable="index_date")
+
+study = StudyDefinition(
+    default_expectations={
+        "date": {"earliest": "2017-04-01", "latest": "2018-03-31"},
+        "rate": "uniform",
+        "incidence" : 0.2
+    },
+    population=patients.which_exist_in_file(NOCKD), 
+    index_date="2017-04-01",
+
+    **variables_additional,
+    **variables_hrg1,
+) 

analysis/study_definition_2017_nockd_hrg2.py

@@ -0,0 +1,33 @@
+
+from cohortextractor import (
+    StudyDefinition,
+    Measure,
+    patients,
+    codelist_from_csv,
+    codelist,
+    filter_codes_by_category,
+    combine_codelists
+)
+
+from codelists import *
+
+NOCKD = "output/2017_nockd.csv"
+
+from variables_nockd import generate_variables_nockd
+variables_nockd= generate_variables_nockd(index_date_variable="index_date")
+
+from variables_hrg2 import generate_variables_hrg2
+variables_hrg2= generate_variables_hrg2(index_date_variable="index_date")
+
+study = StudyDefinition(
+    default_expectations={
+        "date": {"earliest": "2017-04-01", "latest": "2018-03-31"},
+        "rate": "uniform",
+        "incidence" : 0.2
+    },
+    population=patients.which_exist_in_file(NOCKD), 
+    index_date="2017-04-01",
+
+    **variables_additional,
+    **variables_hrg2,
+) 

analysis/study_definition_2017_nockd_hrg3.py

@@ -0,0 +1,33 @@
+
+from cohortextractor import (
+    StudyDefinition,
+    Measure,
+    patients,
+    codelist_from_csv,
+    codelist,
+    filter_codes_by_category,
+    combine_codelists
+)
+
+from codelists import *
+
+NOCKD = "output/2017_nockd.csv"
+
+from variables_nockd import generate_variables_nockd
+variables_nockd= generate_variables_nockd(index_date_variable="index_date")
+
+from variables_hrg3 import generate_variables_hrg3
+variables_hrg3= generate_variables_hrg3(index_date_variable="index_date")
+
+study = StudyDefinition(
+    default_expectations={
+        "date": {"earliest": "2017-04-01", "latest": "2018-03-31"},
+        "rate": "uniform",
+        "incidence" : 0.2
+    },
+    population=patients.which_exist_in_file(NOCKD), 
+    index_date="2017-04-01",
+
+    **variables_additional,
+    **variables_hrg3,
+) 

analysis/study_definition_2017_nockd_hrg4.py

@@ -0,0 +1,33 @@
+
+from cohortextractor import (
+    StudyDefinition,
+    Measure,
+    patients,
+    codelist_from_csv,
+    codelist,
+    filter_codes_by_category,
+    combine_codelists
+)
+
+from codelists import *
+
+NOCKD = "output/2017_nockd.csv"
+
+from variables_nockd import generate_variables_nockd
+variables_nockd= generate_variables_nockd(index_date_variable="index_date")
+
+from variables_hrg4 import generate_variables_hrg4
+variables_hrg4= generate_variables_hrg4(index_date_variable="index_date")
+
+study = StudyDefinition(
+    default_expectations={
+        "date": {"earliest": "2017-04-01", "latest": "2018-03-31"},
+        "rate": "uniform",
+        "incidence" : 0.2
+    },
+    population=patients.which_exist_in_file(NOCKD), 
+    index_date="2017-04-01",
+
+    **variables_additional,
+    **variables_hrg4,
+) 

analysis/study_definition_2018_ckd_hrg1.py

@@ -0,0 +1,33 @@
+from cohortextractor import (
+    StudyDefinition,
+    Measure,
+    patients,
+    codelist_from_csv,
+    codelist,
+    filter_codes_by_category,
+    combine_codelists
+)
+
+from codelists import *
+
+CKD = "output/2018_ckd.csv"
+
+from variables_additional import generate_variables_additional
+variables_additional= generate_variables_additional(index_date_variable="index_date")
+
+from variables_hrg1 import generate_variables_hrg1
+variables_hrg1= generate_variables_hrg1(index_date_variable="index_date")
+
+
+study = StudyDefinition(
+    default_expectations={
+        "date": {"earliest": "2018-04-01", "latest": "2019-03-31"},
+        "rate": "uniform",
+        "incidence" : 0.2
+    },
+    population=patients.which_exist_in_file(CKD), 
+    index_date="2018-04-01",
+
+    **variables_additional,
+    **variables_hrg1,
+) 

analysis/study_definition_2018_ckd_hrg2.py

@@ -0,0 +1,33 @@
+from cohortextractor import (
+    StudyDefinition,
+    Measure,
+    patients,
+    codelist_from_csv,
+    codelist,
+    filter_codes_by_category,
+    combine_codelists
+)
+
+from codelists import *
+
+CKD = "output/2018_ckd.csv"
+
+from variables_additional import generate_variables_additional
+variables_additional= generate_variables_additional(index_date_variable="index_date")
+
+from variables_hrg2 import generate_variables_hrg2
+variables_hrg2= generate_variables_hrg2(index_date_variable="index_date")
+
+
+study = StudyDefinition(
+    default_expectations={
+        "date": {"earliest": "2018-04-01", "latest": "2019-03-31"},
+        "rate": "uniform",
+        "incidence" : 0.2
+    },
+    population=patients.which_exist_in_file(CKD), 
+    index_date="2018-04-01",
+
+    **variables_additional,
+    **variables_hrg2,
+) 

analysis/study_definition_2018_ckd_hrg3.py

@@ -0,0 +1,33 @@
+from cohortextractor import (
+    StudyDefinition,
+    Measure,
+    patients,
+    codelist_from_csv,
+    codelist,
+    filter_codes_by_category,
+    combine_codelists
+)
+
+from codelists import *
+
+CKD = "output/2018_ckd.csv"
+
+from variables_additional import generate_variables_additional
+variables_additional= generate_variables_additional(index_date_variable="index_date")
+
+from variables_hrg3 import generate_variables_hrg3
+variables_hrg3= generate_variables_hrg3(index_date_variable="index_date")
+
+
+study = StudyDefinition(
+    default_expectations={
+        "date": {"earliest": "2018-04-01", "latest": "2019-03-31"},
+        "rate": "uniform",
+        "incidence" : 0.2
+    },
+    population=patients.which_exist_in_file(CKD), 
+    index_date="2018-04-01",
+
+    **variables_additional,
+    **variables_hrg3,
+)