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Deprecate publish component (#941) #1147

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Deprecate publish component (#941)

Deprecate publish component (#941) #1147

Run time

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Job Run time
Build and push target folder
5m 48s
celltypist - annotate - Build and push docker image
2m 56s
onclass - annotate - Build and push docker image
14m 28s
popv - annotate - Build and push docker image
11m 24s
random_forest_annotation - annotate - Build and push docker image
1m 19s
scanvi - annotate - Build and push docker image
7m 49s
svm_annotation - annotate - Build and push docker image
2m 12s
leiden - cluster - Build and push docker image
2m 23s
compress_h5mu - compression - Build and push docker image
2m 14s
tar_extract - compression - Build and push docker image
49s
from_10xh5_to_h5mu - convert - Build and push docker image
1m 46s
from_10xmtx_to_h5mu - convert - Build and push docker image
1m 54s
from_bd_to_10x_molecular_barcode_tags - convert - Build and push docker image
56s
from_bdrhap_to_h5mu - convert - Build and push docker image
1m 16s
from_cellranger_multi_to_h5mu - convert - Build and push docker image
2m 47s
from_h5ad_to_h5mu - convert - Build and push docker image
1m 20s
from_h5mu_to_h5ad - convert - Build and push docker image
1m 10s
from_h5mu_to_seurat - convert - Build and push docker image
4m 7s
cellbender_remove_background - correction - Build and push docker image
10m 39s
cellbender_remove_background_v0_2 - correction - Build and push docker image
7m 32s
concatenate_h5mu - dataflow - Build and push docker image
1m 15s
merge - dataflow - Build and push docker image
3m 50s
split_h5mu - dataflow - Build and push docker image
2m 15s
split_h5mu_train_test - dataflow - Build and push docker image
2m 16s
split_modalities - dataflow - Build and push docker image
1m 15s
bcl2fastq - demux - Build and push docker image
1m 22s
bcl_convert - demux - Build and push docker image
53s
cellranger_atac_mkfastq - demux - Build and push docker image
1m 20s
cellranger_mkfastq - demux - Build and push docker image
2m 8s
densmap - dimred - Build and push docker image
1m 30s
lsi - dimred - Build and push docker image
1m 59s
pca - dimred - Build and push docker image
2m 37s
tsne - dimred - Build and push docker image
1m 50s
umap - dimred - Build and push docker image
1m 55s
download_file - download - Build and push docker image
33s
sync_test_resources - download - Build and push docker image
55s
highly_variable_features_scanpy - feature_annotation - Build and push docker image
2m 41s
score_genes_cell_cycle_scanpy - feature_annotation - Build and push docker image
1m 52s
score_genes_scanpy - feature_annotation - Build and push docker image
2m 57s
make_params - files - Build and push docker image
1m 19s
delimit_fraction - filter - Build and push docker image
1m 47s
do_filter - filter - Build and push docker image
1m 16s
filter_with_counts - filter - Build and push docker image
2m 8s
filter_with_scrublet - filter - Build and push docker image
3m 13s
intersect_obs - filter - Build and push docker image
1m 19s
remove_modality - filter - Build and push docker image
1m 7s
subset_h5mu - filter - Build and push docker image
1m 58s
subset_obsp - filter - Build and push docker image
2m 6s
bcftools - genetic_demux - Build and push docker image
2m 21s
cellsnp - genetic_demux - Build and push docker image
2m 36s
demuxlet - genetic_demux - Build and push docker image
7m 30s
dsc_pileup - genetic_demux - Build and push docker image
4m 0s
freebayes - genetic_demux - Build and push docker image
2m 6s
freemuxlet - genetic_demux - Build and push docker image
7m 49s
samtools - genetic_demux - Build and push docker image
2m 39s
scsplit - genetic_demux - Build and push docker image
1m 42s
souporcell - genetic_demux - Build and push docker image
2m 0s
vireo - genetic_demux - Build and push docker image
1m 20s
harmonypy - integrate - Build and push docker image
1m 51s
scanorama - integrate - Build and push docker image
2m 7s
scarches - integrate - Build and push docker image
15m 55s
scvi - integrate - Build and push docker image
17m 13s
totalvi - integrate - Build and push docker image
14m 7s
lianapy - interpret - Build and push docker image
1m 58s
knn - labels_transfer - Build and push docker image
2m 4s
xgboost - labels_transfer - Build and push docker image
2m 32s
bd_rhapsody - mapping - Build and push docker image
1m 35s
cellranger_atac_count - mapping - Build and push docker image
2m 26s
cellranger_count - mapping - Build and push docker image
1m 49s
cellranger_count_split - mapping - Build and push docker image
49s
cellranger_multi - mapping - Build and push docker image
2m 25s
htseq_count - mapping - Build and push docker image
1m 18s
htseq_count_to_h5mu - mapping - Build and push docker image
2m 11s
multi_star - mapping - Build and push docker image
4m 34s
multi_star_to_h5mu - mapping - Build and push docker image
1m 9s
samtools_sort - mapping - Build and push docker image
57s
star_align - mapping - Build and push docker image
6m 58s
star_align_v273a - mapping - Build and push docker image
5m 35s
add_id - metadata - Build and push docker image
1m 9s
duplicate_obs - metadata - Build and push docker image
1m 56s
duplicate_var - metadata - Build and push docker image
2m 4s
grep_annotation_column - metadata - Build and push docker image
1m 14s
join_csv - metadata - Build and push docker image
1m 45s
join_uns_to_obs - metadata - Build and push docker image
1m 46s
move_obsm_to_obs - metadata - Build and push docker image
1m 57s
bbknn - neighbors - Build and push docker image
2m 59s
find_neighbors - neighbors - Build and push docker image
2m 0s
filter_10xh5 - process_10xh5 - Build and push docker image
2m 24s
calculate_atac_qc_metrics - qc - Build and push docker image
2m 3s
calculate_qc_metrics - qc - Build and push docker image
2m 23s
fastqc - qc - Build and push docker image
1m 29s
multiqc - qc - Build and push docker image
1m 33s
cellxgene_census - query - Build and push docker image
2m 8s
build_bdrhap_reference - reference - Build and push docker image
1m 42s
build_cellranger_arc_reference - reference - Build and push docker image
2m 14s
build_cellranger_reference - reference - Build and push docker image
1m 26s
build_star_reference - reference - Build and push docker image
4m 34s
cellranger_mkgtf - reference - Build and push docker image
1m 21s
make_reference - reference - Build and push docker image
1m 50s
mermaid - report - Build and push docker image
2m 33s
binning - scgpt - Build and push docker image
1m 15s
cell_type_annotation - scgpt - Build and push docker image
7m 7s
cross_check_genes - scgpt - Build and push docker image
6m 14s
embedding - scgpt - Build and push docker image
6m 11s
pad_tokenize - scgpt - Build and push docker image
6m 30s
publish - transfer - Build and push docker image
47s
bpcells_regress_out - transform - Build and push docker image
9m 5s
clr - transform - Build and push docker image
2m 24s
delete_layer - transform - Build and push docker image
2m 2s
log1p - transform - Build and push docker image
1m 53s
move_layer - transform - Build and push docker image
1m 17s
normalize_total - transform - Build and push docker image
1m 54s
regress_out - transform - Build and push docker image
1m 41s
scale - transform - Build and push docker image
2m 49s
tfidf - transform - Build and push docker image
1m 58s
scvelo - velocity - Build and push docker image
2m 44s
velocyto - velocity - Build and push docker image
2m 23s
velocyto_to_h5mu - convert - Build and push docker image
2m 18s
6h 5m 3s