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Use .X as default layer to store cellxgene census query data. (#933) #1136

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Job	Run time
Build and push target folder	5m 55s
celltypist - annotate - Build and push docker image	3m 50s
onclass - annotate - Build and push docker image	14m 18s
popv - annotate - Build and push docker image	14m 0s
random_forest_annotation - annotate - Build and push docker image	1m 17s
scanvi - annotate - Build and push docker image	9m 46s
svm_annotation - annotate - Build and push docker image	1m 17s
leiden - cluster - Build and push docker image	1m 54s
compress_h5mu - compression - Build and push docker image	1m 49s
tar_extract - compression - Build and push docker image	41s
from_10xh5_to_h5mu - convert - Build and push docker image	2m 16s
from_10xmtx_to_h5mu - convert - Build and push docker image	1m 53s
from_bd_to_10x_molecular_barcode_tags - convert - Build and push docker image	1m 34s
from_bdrhap_to_h5mu - convert - Build and push docker image	1m 6s
from_cellranger_multi_to_h5mu - convert - Build and push docker image	2m 1s
from_h5ad_to_h5mu - convert - Build and push docker image	1m 14s
from_h5mu_to_h5ad - convert - Build and push docker image	1m 9s
from_h5mu_to_seurat - convert - Build and push docker image	2m 16s
cellbender_remove_background - correction - Build and push docker image	11m 44s
cellbender_remove_background_v0_2 - correction - Build and push docker image	5m 55s
concatenate_h5mu - dataflow - Build and push docker image	1m 46s
merge - dataflow - Build and push docker image	1m 8s
split_h5mu - dataflow - Build and push docker image	1m 54s
split_h5mu_train_test - dataflow - Build and push docker image	1m 47s
split_modalities - dataflow - Build and push docker image	1m 14s
bcl2fastq - demux - Build and push docker image	37s
bcl_convert - demux - Build and push docker image	47s
cellranger_atac_mkfastq - demux - Build and push docker image	1m 1s
cellranger_mkfastq - demux - Build and push docker image	1m 27s
densmap - dimred - Build and push docker image	1m 26s
lsi - dimred - Build and push docker image	1m 54s
pca - dimred - Build and push docker image	1m 40s
tsne - dimred - Build and push docker image	2m 20s
umap - dimred - Build and push docker image	2m 33s
download_file - download - Build and push docker image	39s
sync_test_resources - download - Build and push docker image	52s
highly_variable_features_scanpy - feature_annotation - Build and push docker image	1m 55s
score_genes_cell_cycle_scanpy - feature_annotation - Build and push docker image	1m 52s
score_genes_scanpy - feature_annotation - Build and push docker image	2m 21s
make_params - files - Build and push docker image	1m 26s
delimit_fraction - filter - Build and push docker image	1m 55s
do_filter - filter - Build and push docker image	1m 51s
filter_with_counts - filter - Build and push docker image	1m 10s
filter_with_scrublet - filter - Build and push docker image	2m 11s
intersect_obs - filter - Build and push docker image	2m 2s
remove_modality - filter - Build and push docker image	1m 10s
subset_h5mu - filter - Build and push docker image	1m 11s
subset_obsp - filter - Build and push docker image	1m 5s
bcftools - genetic_demux - Build and push docker image	2m 14s
cellsnp - genetic_demux - Build and push docker image	2m 32s
demuxlet - genetic_demux - Build and push docker image	6m 52s
dsc_pileup - genetic_demux - Build and push docker image	4m 8s
freebayes - genetic_demux - Build and push docker image	56s
freemuxlet - genetic_demux - Build and push docker image	7m 23s
samtools - genetic_demux - Build and push docker image	3m 11s
scsplit - genetic_demux - Build and push docker image	1m 36s
souporcell - genetic_demux - Build and push docker image	2m 2s
vireo - genetic_demux - Build and push docker image	1m 45s
harmonypy - integrate - Build and push docker image	1m 38s
scanorama - integrate - Build and push docker image	2m 13s
scarches - integrate - Build and push docker image	13m 12s
scvi - integrate - Build and push docker image	12m 36s
totalvi - integrate - Build and push docker image	14m 6s
lianapy - interpret - Build and push docker image	3m 7s
knn - labels_transfer - Build and push docker image	1m 34s
xgboost - labels_transfer - Build and push docker image	3m 0s
bd_rhapsody - mapping - Build and push docker image	2m 5s
cellranger_atac_count - mapping - Build and push docker image	2m 53s
cellranger_count - mapping - Build and push docker image	1m 46s
cellranger_count_split - mapping - Build and push docker image	48s
cellranger_multi - mapping - Build and push docker image	1m 40s
htseq_count - mapping - Build and push docker image	1m 40s
htseq_count_to_h5mu - mapping - Build and push docker image	2m 27s
multi_star - mapping - Build and push docker image	4m 33s
multi_star_to_h5mu - mapping - Build and push docker image	2m 4s
samtools_sort - mapping - Build and push docker image	48s
star_align - mapping - Build and push docker image	3m 49s
star_align_v273a - mapping - Build and push docker image	3m 21s
add_id - metadata - Build and push docker image	1m 9s
duplicate_obs - metadata - Build and push docker image	1m 5s
duplicate_var - metadata - Build and push docker image	2m 8s
grep_annotation_column - metadata - Build and push docker image	1m 40s
join_csv - metadata - Build and push docker image	1m 6s
join_uns_to_obs - metadata - Build and push docker image	1m 14s
move_obsm_to_obs - metadata - Build and push docker image	1m 5s
bbknn - neighbors - Build and push docker image	2m 40s
find_neighbors - neighbors - Build and push docker image	1m 44s
filter_10xh5 - process_10xh5 - Build and push docker image	2m 11s
calculate_atac_qc_metrics - qc - Build and push docker image	1m 52s
calculate_qc_metrics - qc - Build and push docker image	1m 41s
fastqc - qc - Build and push docker image	2m 24s
multiqc - qc - Build and push docker image	2m 5s
cellxgene_census - query - Build and push docker image	2m 15s
build_bdrhap_reference - reference - Build and push docker image	1m 31s
build_cellranger_arc_reference - reference - Build and push docker image	2m 3s
build_cellranger_reference - reference - Build and push docker image	1m 21s
build_star_reference - reference - Build and push docker image	3m 33s
cellranger_mkgtf - reference - Build and push docker image	2m 4s
make_reference - reference - Build and push docker image	51s
mermaid - report - Build and push docker image	2m 31s
binning - scgpt - Build and push docker image	1m 11s
cell_type_annotation - scgpt - Build and push docker image	6m 48s
cross_check_genes - scgpt - Build and push docker image	6m 54s
embedding - scgpt - Build and push docker image	6m 33s
pad_tokenize - scgpt - Build and push docker image	6m 32s
publish - transfer - Build and push docker image	37s
bpcells_regress_out - transform - Build and push docker image	9m 7s
clr - transform - Build and push docker image	2m 41s
delete_layer - transform - Build and push docker image	1m 15s
log1p - transform - Build and push docker image	1m 55s
move_layer - transform - Build and push docker image	1m 9s
normalize_total - transform - Build and push docker image	2m 38s
regress_out - transform - Build and push docker image	1m 46s
scale - transform - Build and push docker image	1m 42s
tfidf - transform - Build and push docker image	1m 51s
scvelo - velocity - Build and push docker image	1m 52s
velocyto - velocity - Build and push docker image	2m 28s
velocyto_to_h5mu - convert - Build and push docker image	2m 23s
	5h 40m 43s

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Use .X as default layer to store cellxgene census query data. (#933) #1136

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Use .X as default layer to store cellxgene census query data. (#933) #1136

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