fix annotator after updating RDF version to 3.0

.github/workflows/ruby-unit-tests.yml

@@ -15,6 +15,8 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
+      - name: create config.rb file
+        run: cp config/config.test.rb config/config.rb
       - name: Set up solr configsets
         run: ./test/solr/generate_ncbo_configsets.sh
       - name: Install Dependencies

Gemfile.lock

@@ -1,6 +1,6 @@
 GIT
   remote: https://github.com/ontoportal-lirmm/goo.git
-  revision: cd5bc312bd3acd2ff056a87a6f37b5419f3444dc
+  revision: cb03c4888cc95006e653eb70dd29ee69901dd6cd
   branch: development
   specs:
     goo (0.0.2)
@@ -196,6 +196,7 @@ GEM
 
 PLATFORMS
   x86_64-darwin-23
+  x86_64-linux
 
 DEPENDENCIES
   addressable (~> 2.8.0)

lib/ncbo_annotator.rb

@@ -733,11 +733,13 @@ def redis_last_mgrep_restart_default_timestamp()
       def create_term_entry(redis, instance_prefix, ontResourceId, resourceId, label_type, val, semanticTypes)
         begin
           # NCBO-696 - Remove case-sensitive variations on terms in annotator dictionary
-          val.upcase!()
+          val = val.dup.upcase
         rescue ArgumentError => e
+          binding.pry
+          val = val.dup
           # NCBO-832 - SCTSPA Annotator Cache building error (UTF-8)
           val = val.encode('UTF-8', 'binary', invalid: :replace, undef: :replace, replace: '')
-          val.upcase!()
+          val = val.upcase
         end
 
         # exclude single-character or empty/null values