update installation

olive004 · Nov 20, 2024 · b0251c5 · b0251c5
1 parent 5f7046e
commit b0251c5
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Showing 7 changed files with 8 additions and 8 deletions.
diff --git a/docker_unix/Dockerfile b/docker_unix/Dockerfile
@@ -18,7 +18,7 @@ RUN cd /usr/lib/install_requirements && \
 RUN pip install jax==0.4.29
 RUN pip install --upgrade "jax[cuda12_pip]" -f https://storage.googleapis.com/jax-releases/jax_cuda_releases.html
 # RUN python3 -m pipinstall "jax[cuda11_cudnn86]" -f https://storage.googleapis.com/jax-releases/jax_cuda_releases.html
-RUN pip install -e git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@599990dcac56e7678f45269d2fc9df736d25f356#egg=bioreaction
+RUN pip install -e git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@f903c39872de43e28b56653efda689bb082cb592#egg=bioreaction
 RUN export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/usr/local/cuda/lib64:/
 # RUN pip install "jax[cuda11_pip]" -f https://storage.googleapis.com/jax-releases/jax_cuda_releases.html
 

diff --git a/docker_unix/requirements.txt b/docker_unix/requirements.txt
@@ -28,4 +28,4 @@ tqdm
 umap-learn
 wandb
 
-# -e git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@599990dcac56e7678f45269d2fc9df736d25f356#egg=bioreaction
+# -e git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@f903c39872de43e28b56653efda689bb082cb592#egg=bioreaction
diff --git a/docker_unix_hslab/Dockerfile b/docker_unix_hslab/Dockerfile
@@ -19,7 +19,7 @@ RUN cd /usr/lib/install_requirements && \
     pip install -r ./requirements.txt 
 # RUN pip install jax==0.4.13
 RUN pip install --upgrade "jax[cuda12_pip]" -f https://storage.googleapis.com/jax-releases/jax_cuda_releases.html
-RUN pip install git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@599990dcac56e7678f45269d2fc9df736d25f356#egg=bioreaction
+RUN pip install git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@f903c39872de43e28b56653efda689bb082cb592#egg=bioreaction
 RUN export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/usr/local/cuda/lib64:/
 
 ################################################################################

diff --git a/docker_unix_hslab/post_install2.sh b/docker_unix_hslab/post_install2.sh
@@ -16,5 +16,5 @@ curl -sS https://bootstrap.pypa.io/get-pip.py | python3.11
 python3 --version
 # python3.10 -m pip install ipython
 
-# pip install git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@599990dcac56e7678f45269d2fc9df736d25f356#egg=bioreaction
+# pip install git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@f903c39872de43e28b56653efda689bb082cb592#egg=bioreaction
 pip install -e src/bioreaction
diff --git a/docker_unix_hslab/requirements.txt b/docker_unix_hslab/requirements.txt
@@ -28,4 +28,4 @@ tqdm
 umap-learn
 wandb
 
-# -e git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@599990dcac56e7678f45269d2fc9df736d25f356#egg=bioreaction
+# -e git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@f903c39872de43e28b56653efda689bb082cb592#egg=bioreaction
diff --git a/requirements.txt b/requirements.txt
@@ -28,4 +28,4 @@ tqdm
 umap-learn
 wandb
 
-# -e git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@599990dcac56e7678f45269d2fc9df736d25f356#egg=bioreaction
+# -e git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@f903c39872de43e28b56653efda689bb082cb592#egg=bioreaction
diff --git a/setup/post_install.sh b/setup/post_install.sh
@@ -3,7 +3,7 @@
 pip install jax==0.4.29
 pip install jaxlib==0.4.29+cuda12.cudnn91 -f https://storage.googleapis.com/jax-releases/jax_cuda_releases.html 
 pip install -U chex
-pip install git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@599990dcac56e7678f45269d2fc9df736d25f356#egg=bioreaction
+pip install git+https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git@f903c39872de43e28b56653efda689bb082cb592#egg=bioreaction
 
 if [ -d "src/bioreaction" ]; then
     echo "Directory src/bioreaction exists."
@@ -12,4 +12,4 @@ else
     git clone https://github.com/Steel-Lab-Oxford/core-bioreaction-simulation.git
     cd ..
 fi
-pip install -e src/bioreaction
+pip install -e src/bioreaction