rename vis scripts

olive004 · Oct 18, 2024 · 142bb59 · 142bb59
1 parent fd1575c
commit 142bb59
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Showing 52 changed files with 182 additions and 182 deletions.
diff --git a/run_main.py b/run_main.py
@@ -13,15 +13,15 @@
 # from synbio_morpher.scripts.mutation_effect_on_interactions_signal.run_mutation_effect_on_interactions_signal import main
 # from synbio_morpher.scripts.summarise_simulation.run_summarise_simulation import main
 # from synbio_morpher.scripts.analyse_mutated_templates.run_analyse_mutated_templates import main
-# from synbio_morpher.scripts.analyse_mutated_templates_loaded_0.run_analyse_mutated_templates_loaded_0 import main
-# from synbio_morpher.scripts.analyse_mutated_templates_loaded_0_nosig.run_analyse_mutated_templates_loaded_0_nosig import main
-# from synbio_morpher.scripts.analyse_mutated_templates_loaded_1.run_analyse_mutated_templates_loaded_1 import main
-# from synbio_morpher.scripts.analyse_mutated_templates_loaded_2.run_analyse_mutated_templates_loaded_2 import main
-# from synbio_morpher.scripts.analyse_mutated_templates_loaded_2_nosig.run_analyse_mutated_templates_loaded_2_nosig import main
-# from synbio_morpher.scripts.analyse_mutated_templates_loaded_3.run_analyse_mutated_templates_loaded_3 import main
-# from synbio_morpher.scripts.analyse_mutated_templates_loaded_4.run_analyse_mutated_templates_loaded_4 import main
-# from synbio_morpher.scripts.analyse_mutated_templates_loaded_5.run_analyse_mutated_templates_loaded_5 import main
-# from synbio_morpher.scripts.analyse_mutated_templates_loaded_means.run_analyse_mutated_templates_loaded_means import main
+# from synbio_morpher.scripts.vis_0_histplots.run_vis_0_histplots import main
+# from synbio_morpher.scripts.vis_0_histplots_nosig.run_vis_0_histplots_nosig import main
+# from synbio_morpher.scripts.vis_1_histplots_interactions.run_vis_1_histplots_interactions import main
+# from synbio_morpher.scripts.vis_2_histplots_diffs_ratios.run_vis_2_histplots_diffs_ratios import main
+# from synbio_morpher.scripts.vis_2_histplots_diffs_ratios_nosig.run_vis_2_histplots_diffs_ratios_nosig import main
+# from synbio_morpher.scripts.vis_3_mutation_types_positions_1.run_vis_3_mutation_types_positions_1 import main
+# from synbio_morpher.scripts.vis_3_mutation_types_positions_2.run_vis_3_mutation_types_positions_2 import main
+# from synbio_morpher.scripts.vis_4_histplots_thresholded.run_vis_4_histplots_thresholded import main
+# from synbio_morpher.scripts.vis_5_means_analytics.run_vis_5_means_analytics import main
 from synbio_morpher.scripts.ensemble_mutation_effect_analysis.run_ensemble_mutation_effect_analysis import main
 # from synbio_morpher.scripts.ensemble_visualisation.run_ensemble_visualisation import main
 # from synbio_morpher.scripts.parameter_based_simulation.run_parameter_based_simulation import main

diff --git a/synbio_morpher/scripts/ensemble_mutation_effect_analysis/configs/base_config.json b/synbio_morpher/scripts/ensemble_mutation_effect_analysis/configs/base_config.json
@@ -78,9 +78,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_0": {
+        "vis_0_histplots": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_0"
+                "purpose": "vis_0_histplots"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -92,9 +92,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_0_nosig": {
+        "vis_0_histplots_nosig": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_0_nosig"
+                "purpose": "vis_0_histplots_nosig"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -109,9 +109,9 @@
                 "inputs": ["RNA_0"]
             }
         },
-        "analyse_mutated_templates_loaded_1": {
+        "vis_1_histplots_interactions": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_1"
+                "purpose": "vis_1_histplots_interactions"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -123,9 +123,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_3": {
+        "vis_3_mutation_types_positions_1": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_3"
+                "purpose": "vis_3_mutation_types_positions_1"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -137,9 +137,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_4": {
+        "vis_3_mutation_types_positions_2": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_4"
+                "purpose": "vis_3_mutation_types_positions_2"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -151,9 +151,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_5": {
+        "vis_4_histplots_thresholded": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_5"
+                "purpose": "vis_4_histplots_thresholded"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -165,9 +165,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_means": {
+        "vis_5_means_analytics": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_means"
+                "purpose": "vis_5_means_analytics"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -178,9 +178,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_2": {
+        "vis_2_histplots_diffs_ratios": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_2"
+                "purpose": "vis_2_histplots_diffs_ratios"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -192,9 +192,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_2_nosig": {
+        "vis_2_histplots_diffs_ratios_nosig": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_2_nosig"
+                "purpose": "vis_2_histplots_diffs_ratios_nosig"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,

diff --git a/...o_morpher/scripts/ensemble_mutation_effect_analysis/configs/distribution_of_energies.json b/...o_morpher/scripts/ensemble_mutation_effect_analysis/configs/distribution_of_energies.json
@@ -106,9 +106,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_0": {
+        "vis_0_histplots": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_0"
+                "purpose": "vis_0_histplots"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -120,9 +120,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_1": {
+        "vis_1_histplots_interactions": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_1"
+                "purpose": "vis_1_histplots_interactions"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -134,9 +134,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_2": {
+        "vis_2_histplots_diffs_ratios": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_2"
+                "purpose": "vis_2_histplots_diffs_ratios"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -148,9 +148,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_3": {
+        "vis_3_mutation_types_positions_1": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_3"
+                "purpose": "vis_3_mutation_types_positions_1"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -162,9 +162,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_4": {
+        "vis_3_mutation_types_positions_2": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_4"
+                "purpose": "vis_3_mutation_types_positions_2"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -176,9 +176,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_means": {
+        "vis_5_means_analytics": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_means"
+                "purpose": "vis_5_means_analytics"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,

diff --git a/...er/scripts/ensemble_mutation_effect_analysis/configs/distribution_of_energies_loaded.json b/...er/scripts/ensemble_mutation_effect_analysis/configs/distribution_of_energies_loaded.json
@@ -87,9 +87,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_0": {
+        "vis_0_histplots": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_0"
+                "purpose": "vis_0_histplots"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -101,9 +101,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_1": {
+        "vis_1_histplots_interactions": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_1"
+                "purpose": "vis_1_histplots_interactions"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -115,9 +115,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_2": {
+        "vis_2_histplots_diffs_ratios": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_2"
+                "purpose": "vis_2_histplots_diffs_ratios"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -129,9 +129,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_3": {
+        "vis_3_mutation_types_positions_1": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_3"
+                "purpose": "vis_3_mutation_types_positions_1"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -143,9 +143,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_4": {
+        "vis_3_mutation_types_positions_2": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_4"
+                "purpose": "vis_3_mutation_types_positions_2"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -157,9 +157,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_means": {
+        "vis_5_means_analytics": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_means"
+                "purpose": "vis_5_means_analytics"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,

diff --git a/synbio_morpher/scripts/ensemble_mutation_effect_analysis/configs/full_mutate.json b/synbio_morpher/scripts/ensemble_mutation_effect_analysis/configs/full_mutate.json
@@ -100,9 +100,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_0": {
+        "vis_0_histplots": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_0"
+                "purpose": "vis_0_histplots"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -114,9 +114,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_1": {
+        "vis_1_histplots_interactions": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_1"
+                "purpose": "vis_1_histplots_interactions"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -128,9 +128,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_2": {
+        "vis_2_histplots_diffs_ratios": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_2"
+                "purpose": "vis_2_histplots_diffs_ratios"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -142,9 +142,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_3": {
+        "vis_3_mutation_types_positions_1": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_3"
+                "purpose": "vis_3_mutation_types_positions_1"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -156,9 +156,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_4": {
+        "vis_3_mutation_types_positions_2": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_4"
+                "purpose": "vis_3_mutation_types_positions_2"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,

diff --git a/synbio_morpher/scripts/ensemble_mutation_effect_analysis/configs/test_dt.json b/synbio_morpher/scripts/ensemble_mutation_effect_analysis/configs/test_dt.json
@@ -99,9 +99,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_0": {
+        "vis_0_histplots": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_0"
+                "purpose": "vis_0_histplots"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -113,9 +113,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_1": {
+        "vis_1_histplots_interactions": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_1"
+                "purpose": "vis_1_histplots_interactions"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -127,9 +127,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_2": {
+        "vis_2_histplots_diffs_ratios": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_2"
+                "purpose": "vis_2_histplots_diffs_ratios"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -141,9 +141,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_3": {
+        "vis_3_mutation_types_positions_1": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_3"
+                "purpose": "vis_3_mutation_types_positions_1"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,
@@ -155,9 +155,9 @@
             "preprocessing_func": null,
             "only_visualise_circuits": false
         },
-        "analyse_mutated_templates_loaded_4": {
+        "vis_3_mutation_types_positions_2": {
             "experiment": {
-                "purpose": "analyse_mutated_templates_loaded_4"
+                "purpose": "vis_3_mutation_types_positions_2"
             },
             "source_dirs": {
                 "is_source_dir_incomplete": true,