Release version 1.1.0, tested on Glires

oist · Sep 23, 2024 · d321dec · d321dec
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,10 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v1.1.0 - September 24th, 2024 (Mus caroli)
+
+Expanded the pattern matching chromosome contigs to `^(CM|CP|FR|L[R-T]|O[U-Z])`.
+
 ## v1.0.0 - September 20th, 2024 (Orang Outan)
 
 Initial release of oist/LuscombeU_stlpreprocess, created with the [nf-core](https://nf-co.re/) template.

diff --git a/README.md b/README.md
@@ -12,9 +12,11 @@
 ## TODO
 
 - Some assemblies only contain fragmented condigs of the mitochondrial genome.
-  Filter them out. In `GCA_000146795` they match `Contig` and `>AD` while
-  complete Primate mitogenomes do not (`>CM`, `>CP`, `>J0`, `>KT`, `>LN`).
-
+  Filter them out.
+   - In `GCA_000146795` they match `Contig` and `>AD` while
+     complete Primate mitogenomes do not (`>CM`, `>CP`, `>J0`, `>KT`, `>LN`).
+   - In `GCA_015711505` they match `HiC_scaffold` and `>JA` while
+     complete Glire mitogenomes do not (`>AA`, `>AY`, `>CM`, `>JA`, `>LR`, `>OR`, `>OW`, `>OX`, `>OY`, `>OZ`).
 - Take TSV as input instead of CSV. With or without header?
 
 ## Usage