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Refresh external resources for August 2024 release #3331

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Aug 6, 2024
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Refresh external resources for August 2024 release #3331

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174 changes: 87 additions & 87 deletions src/mappings/cl.sssom.tsv
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-aeo.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aeo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-aeo.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-aeo.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-caro.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-caro.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-caro.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-ehdaa2.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-ehdaa2.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-ehdaa2.owl"/>
<terms:contributor>Jonathan Bard</terms:contributor>
<terms:creator>CL editors</terms:creator>
<terms:description>Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA.</terms:description>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-emapa.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-emapa.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-emapa.owl"/>
<terms:creator>Anne Niknejad</terms:creator>
<terms:creator>Aurelie Comte</terms:creator>
<terms:creator>CL editors</terms:creator>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-fbbt.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-fbbt.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-fbbt.owl"/>
<terms:contributor>David Osumi-Sutherland</terms:contributor>
<terms:creator>CL editors</terms:creator>
<terms:description>Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and CL.</terms:description>
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8 changes: 4 additions & 4 deletions src/ontology/bridge/cl-bridge-to-fma.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fma.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-fma.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-fma.owl"/>
<terms:contributor>Onard Mejino</terms:contributor>
<terms:contributor>Terry Hayamizu</terms:contributor>
<terms:creator>CL editors</terms:creator>
Expand Down Expand Up @@ -7372,7 +7372,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>pneumocyte (post-embryonic human)</obo:IAO_0000589>
<obo:IAO_0000589>pulmonary alveolar epithelial cell (post-embryonic human)</obo:IAO_0000589>
</owl:Class>


Expand All @@ -7391,7 +7391,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>type I pneumocyte (post-embryonic human)</obo:IAO_0000589>
<obo:IAO_0000589>pulmonary alveolar type 1 cell (post-embryonic human)</obo:IAO_0000589>
</owl:Class>


Expand All @@ -7410,7 +7410,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>type II pneumocyte (post-embryonic human)</obo:IAO_0000589>
<obo:IAO_0000589>pulmonary alveolar type 2 cell (post-embryonic human)</obo:IAO_0000589>
</owl:Class>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-go.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-go.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-go.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-kupo.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-kupo.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-kupo.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-ma.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ma.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-ma.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-ma.owl"/>
<terms:contributor>George Gkoutos</terms:contributor>
<terms:creator>CL editors</terms:creator>
<terms:creator>Terry Hayamizu</terms:creator>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-ncit.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ncit.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-ncit.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-ncit.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-sctid.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-sctid.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-sctid.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-sctid.owl"/>
<terms:contributor>OBOL</terms:contributor>
<terms:creator>CL editors</terms:creator>
<terms:description>Rough subclass axioms between SNOMED-CT and CL. Note that SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree.</terms:description>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-wbbt.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-wbbt.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-wbbt.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-wbbt.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-xao.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-xao.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-xao.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-xao.owl"/>
<terms:contributor>Erik Segerdell</terms:contributor>
<terms:contributor>VG Ponferrada</terms:contributor>
<terms:creator>CL editors</terms:creator>
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4 changes: 2 additions & 2 deletions src/ontology/bridge/cl-bridge-to-zfa.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-zfa.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/cl-bridge-to-zfa.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/cl-bridge-to-zfa.owl"/>
<terms:contributor>Melissa Haendel</terms:contributor>
<terms:contributor>Veri Van Slyke</terms:contributor>
<terms:contributor>Yvonne Bradford</terms:contributor>
Expand Down Expand Up @@ -8720,7 +8720,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>fenestrated cell (zebrafish)</obo:IAO_0000589>
<obo:IAO_0000589>fenestrated endothelial cell (zebrafish)</obo:IAO_0000589>
</owl:Class>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/uberon-bridge-to-aeo.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aeo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/uberon-bridge-to-aeo.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/uberon-bridge-to-aeo.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/uberon-bridge-to-bfo.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bfo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/uberon-bridge-to-bfo.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/uberon-bridge-to-bfo.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/uberon-bridge-to-caro.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/uberon-bridge-to-caro.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/uberon-bridge-to-caro.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/uberon-bridge-to-dhba.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dhba.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/uberon-bridge-to-dhba.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/uberon-bridge-to-dhba.owl"/>
</owl:Ontology>


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40 changes: 39 additions & 1 deletion src/ontology/bridge/uberon-bridge-to-dmba.owl
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<!-- http://purl.obolibrary.org/obo/UBERON_8440041 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_8440041"/>



<!-- https://purl.brain-bican.org/ontology/dmbao/DMBA_112892315 -->

<owl:Class rdf:about="https://purl.brain-bican.org/ontology/dmbao/DMBA_112892315">
Expand Down Expand Up @@ -7763,6 +7769,37 @@



<!-- https://purl.brain-bican.org/ontology/dmbao/DMBA_16271 -->

<owl:Class rdf:about="https://purl.brain-bican.org/ontology/dmbao/DMBA_16271">
<owl:equivalentClass rdf:nodeID="genid1129"/>
<obo:IAO_0000589>lateral tuberal nucleus</obo:IAO_0000589>
<oboInOwl:status>Verified</oboInOwl:status>
</owl:Class>
<owl:Class rdf:nodeID="genid1129">
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_8440041"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_10090"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="https://purl.brain-bican.org/ontology/dmbao/DMBA_16271"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#equivalentClass"/>
<owl:annotatedTarget rdf:nodeID="genid1129"/>
<rdfs:label>tuberal nucleus (sensu Rodentia)</rdfs:label>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="https://purl.brain-bican.org/ontology/dmbao/DMBA_16271"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#status"/>
<owl:annotatedTarget>Verified</owl:annotatedTarget>
<oboInOwl:source>https://ror.org/03cpe7c52</oboInOwl:source>
</owl:Axiom>



<!-- https://purl.brain-bican.org/ontology/dmbao/DMBA_16308 -->

<owl:Class rdf:about="https://purl.brain-bican.org/ontology/dmbao/DMBA_16308">
Expand Down Expand Up @@ -17825,4 +17862,5 @@



<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
<!-- Generated by the OWL API (version 4.5.29) https://github.com/owlcs/owlapi -->

2 changes: 1 addition & 1 deletion src/ontology/bridge/uberon-bridge-to-ehdaa2.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/uberon-bridge-to-ehdaa2.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/uberon-bridge-to-ehdaa2.owl"/>
<terms:contributor>Jonathan Bard</terms:contributor>
<terms:creator>Uberon editors</terms:creator>
<terms:description>Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA.</terms:description>
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6 changes: 3 additions & 3 deletions src/ontology/bridge/uberon-bridge-to-emapa.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/uberon-bridge-to-emapa.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/uberon-bridge-to-emapa.owl"/>
<terms:creator>Anne Niknejad</terms:creator>
<terms:creator>Aurelie Comte</terms:creator>
<terms:creator>Uberon editors</terms:creator>
Expand Down Expand Up @@ -70929,7 +70929,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>left uterine tube (embryonic mouse)</obo:IAO_0000589>
<obo:IAO_0000589>left fallopian tube (embryonic mouse)</obo:IAO_0000589>
</owl:Class>


Expand All @@ -70948,7 +70948,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>right uterine tube (embryonic mouse)</obo:IAO_0000589>
<obo:IAO_0000589>right fallopian tube (embryonic mouse)</obo:IAO_0000589>
</owl:Class>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/uberon-bridge-to-fbbt.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-fbbt.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/uberon-bridge-to-fbbt.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/uberon-bridge-to-fbbt.owl"/>
<terms:contributor>David Osumi-Sutherland</terms:contributor>
<terms:creator>Uberon editors</terms:creator>
<terms:description>Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and Uberon.</terms:description>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/uberon-bridge-to-fbdv.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-fbdv.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/bridge/uberon-bridge-to-fbdv.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/bridge/uberon-bridge-to-fbdv.owl"/>
</owl:Ontology>


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