Update uberon-edit.obo

obophenotype · Sep 18, 2023 · eb439f8 · eb439f8
1 parent 4856c5b
commit eb439f8
Showing 1 changed file with 40 additions and 32 deletions.
diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo
@@ -2649,7 +2649,7 @@ subset: grouping_class
 subset: non_informative
 xref: Wikipedia:Sulcus_(anatomy)
 is_a: UBERON:0000464 ! anatomical space
-relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall
+relationship: dc-contributor https://orcid.org/0000-0002-6601-2165
 creation_date: 2009-04-09T06:23:22Z
 
 [Term]
@@ -2661,7 +2661,7 @@ synonym: "membrane of organ" EXACT []
 xref: FMA:7145
 is_a: UBERON:0000062 ! organ
 relationship: composed_primarily_of UBERON:0011823 {source="FMA-def"} ! dense connective tissue
-relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall
+relationship: dc-contributor https://orcid.org/0000-0002-6601-2165
 creation_date: 2009-07-30T05:19:13Z
 
 [Term]
@@ -2676,7 +2676,7 @@ xref: Wikipedia:Cardiac_neural_crest
 xref: XAO:0004190
 xref: ZFA:0001648
 is_a: UBERON:0000479 ! tissue
-relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall
+relationship: dc-contributor https://orcid.org/0000-0002-6601-2165
 relationship: overlaps UBERON:0005428 {source="Wikipedia"} ! vagal neural crest
 relationship: part_of UBERON:0002342 ! neural crest
 property_value: external_definition "A subpopulation of the cephalic neural crest that emerges from the otic level to the anterior limit of somite 4. It migrates to the heart and is essential for the septation of the outflow track[DOI:10.1242/dev.091751]." xsd:string {source="DOI:10.1242/dev.091751"}
@@ -3918,7 +3918,7 @@ xref: CARO:0000081
 is_a: UBERON:0006314 ! bodily fluid
 intersection_of: UBERON:0000463 ! organism substance
 intersection_of: part_of UBERON:0002193 ! hemolymphoid system
-relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall
+relationship: dc-contributor https://orcid.org/0000-0002-6601-2165
 relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa
 creation_date: 2009-04-08T04:38:19Z
 
@@ -3994,7 +3994,7 @@ def: "A blood brain barrier that is composed of endothelial cells." [https://orc
 xref: NIF_Subcellular:nlx_subcell_100205
 intersection_of: UBERON:0000120 ! blood brain barrier
 intersection_of: composed_primarily_of CL:0000115 ! endothelial cell
-relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall
+relationship: dc-contributor https://orcid.org/0000-0002-6601-2165
 creation_date: 2009-04-10T08:15:44Z
 
 [Term]
@@ -4003,7 +4003,7 @@ name: glial blood brain barrier
 def: "A blood brain barrier composed of glial cells." [https://orcid.org/0000-0002-6601-2165]
 intersection_of: UBERON:0000120 ! blood brain barrier
 intersection_of: composed_primarily_of CL:0000125 ! glial cell
-relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall
+relationship: dc-contributor https://orcid.org/0000-0002-6601-2165
 creation_date: 2009-04-10T08:42:24Z
 
 [Term]
@@ -4028,7 +4028,7 @@ xref: Wikipedia:Avian_pallium
 xref: Wikipedia:Pallium_(neuroanatomy)
 xref: ZFA:0000505
 is_a: UBERON:0002616 ! regional part of brain
-relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall
+relationship: dc-contributor https://orcid.org/0000-0002-6601-2165
 relationship: part_of UBERON:0001893 ! telencephalon
 relationship: present_in_taxon NCBITaxon:7762 {source="PMID:8932866"} ! Myxinidae
 property_value: homology_notes "In the anatomy of animals, an avian pallium is the dorsal telencephalon of a bird's brain. Pallium of avian species tend to be relatively large, comprising ~75% of the telencephalic volume." xsd:string {source="Wikipedia:Avian_pallium", taxon="NCBITaxon:8782"}
@@ -4052,7 +4052,7 @@ xref: EFO:0003522
 xref: TAO:0000304
 xref: ZFA:0000304
 is_a: UBERON:0002616 ! regional part of brain
-relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall
+relationship: dc-contributor https://orcid.org/0000-0002-6601-2165
 relationship: dorsal_to UBERON:0000203 {notes="separated by cell-free region"} ! pallium
 relationship: part_of UBERON:0001893 ! telencephalon
 property_value: external_ontology_notes "BTO term refers specifically to the avian structure" xsd:string {external_ontology="BTO"}
@@ -4066,7 +4066,7 @@ synonym: "papulae" EXACT PLURAL [ISBN:0030229073]
 synonym: "papulli" EXACT PLURAL []
 xref: Wikipedia:Papula
 is_a: UBERON:0002535 ! gill
-relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall
+relationship: dc-contributor https://orcid.org/0000-0002-6601-2165
 relationship: only_in_taxon NCBITaxon:7586 ! Echinodermata
 creation_date: 2009-04-18T01:13:57Z
 
@@ -4078,7 +4078,7 @@ xref: ANISEED:1235300
 xref: Wikipedia:Gill#Vertebrate_gills
 is_a: UBERON:0002535 ! gill
 relationship: adjacent_to UBERON:0001042 ! chordate pharynx
-relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall
+relationship: dc-contributor https://orcid.org/0000-0002-6601-2165
 property_value: function_notes "Gills are made of filaments which help increase surface area for oxygen exchange" xsd:string
 property_value: taxon_notes "In bony fish, the gills are covered by a bony cover called an operculum. When a fish breathes, it opens its mouth at regular times and draws in a mouthful of water. It then draws the sides of its throat together, forcing the water through the gill openings. The water passes over the gills on the outside. Valves inside the mouth keep the water from escaping through the mouth again. The operculum can be very important in adjusting the pressure of water inside of the pharynx to allow proper ventilation of the gills. Lampreys and sharks lack an operculum, they have multiple gill openings. Also, they must use different methods to force water over the gills. In sharks and rays, this ventilation of the gills is achieved either by the use of spiracles or ram ventilation (ventilation by constantly swimming). Although some animals use this method it is much better for animals to use a spiracle because they are less susceptible to injury" xsd:string
 creation_date: 2009-04-18T01:18:17Z
@@ -4092,7 +4092,7 @@ xref: TADS:0000304
 is_a: UBERON:0000476 ! acellular anatomical structure
 is_a: UBERON:0005389 ! transparent eye structure
 disjoint_from: UBERON:0000965 ! lens of camera-type eye
-relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall
+relationship: dc-contributor https://orcid.org/0000-0002-6601-2165
 relationship: part_of UBERON:0000018 ! compound eye
 creation_date: 2009-04-18T01:35:32Z
 
@@ -4209,7 +4209,7 @@ xref: Wikipedia:Toilet-claw
 is_a: UBERON:0001705 ! nail
 relationship: capable_of_part_of GO:0007625 ! grooming behavior
 relationship: capable_of_part_of NBO:0000451 {source="Wikipedia"} ! personal grooming
-relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall
+relationship: dc-contributor https://orcid.org/0000-0002-6601-2165
 creation_date: 2009-05-19T08:19:58Z
 
 [Term]
@@ -190417,7 +190417,7 @@ name: digestive tract junction
 def: "An anatomical junction between two parts of the digestive tract." [https://orcid.org/0000-0002-7073-9172]
 intersection_of: UBERON:0007651 ! anatomical junction
 intersection_of: connects UBERON:0004921 ! subdivision of digestive tract
-relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 ! David Osumi-Sutherland
+relationship: dc-contributor https://orcid.org/0000-0002-7073-9172
 creation_date: 2021-02-05T11:19:31Z
 
 [Term]
@@ -221598,7 +221598,7 @@ id: UBERON:8200002
 name: copepodite stage 1
 def: "A development stage of copepods which immediately follows the nauplius stage. It is characterized by the presence of 2 swimming legs." [http://orcid.org/0000-0002-2908-3327]
 is_a: UBERON:0000105 ! life cycle stage
-relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 ! Anne Thessen
+relationship: dc-contributor https://orcid.org/0000-0002-2908-3327
 relationship: only_in_taxon NCBITaxon:6830 ! Copepoda
 relationship: part_of UBERON:0014860 ! copepodite stage
 relationship: part_of UBERON:0018378 ! crustacean larval stage
@@ -221610,7 +221610,7 @@ id: UBERON:8200003
 name: copepodite stage 2
 def: "A development stage of copepods which immediately follows copepodite stage 1. It is characterized by the presence of 3 swimming legs." [http://orcid.org/0000-0002-2908-3327]
 is_a: UBERON:0000105 ! life cycle stage
-relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 ! Anne Thessen
+relationship: dc-contributor https://orcid.org/0000-0002-2908-3327
 relationship: only_in_taxon NCBITaxon:6830 ! Copepoda
 relationship: part_of UBERON:0014860 ! copepodite stage
 relationship: part_of UBERON:0018378 ! crustacean larval stage
@@ -221622,7 +221622,7 @@ id: UBERON:8200004
 name: copepodite stage 3
 def: "A development stage of copepods which immediately follows copepodite stage 2. It is characterized by the presence of 4 swimming legs." [http://orcid.org/0000-0002-2908-3327]
 is_a: UBERON:0000105 ! life cycle stage
-relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 ! Anne Thessen
+relationship: dc-contributor https://orcid.org/0000-0002-2908-3327
 relationship: only_in_taxon NCBITaxon:6830 ! Copepoda
 relationship: part_of UBERON:0014860 ! copepodite stage
 relationship: part_of UBERON:0018378 ! crustacean larval stage
@@ -221634,7 +221634,7 @@ id: UBERON:8200005
 name: copepodite stage 4
 def: "A development stage of copepods which immediately follows copepodite stage 3. It is characterized by the presence of 5 swimming legs." [http://orcid.org/0000-0002-2908-3327]
 is_a: UBERON:0000105 ! life cycle stage
-relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 ! Anne Thessen
+relationship: dc-contributor https://orcid.org/0000-0002-2908-3327
 relationship: only_in_taxon NCBITaxon:6830 ! Copepoda
 relationship: part_of UBERON:0014860 ! copepodite stage
 relationship: part_of UBERON:0018378 ! crustacean larval stage
@@ -221646,7 +221646,7 @@ id: UBERON:8200006
 name: copepodite stage 5
 def: "A pre-adult stage of copepods which immediately follows copepodite stage 4. It is characterized by enlargement of the urosome and development of sexual organs." [http://orcid.org/0000-0002-2908-3327]
 is_a: UBERON:0000105 ! life cycle stage
-relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 ! Anne Thessen
+relationship: dc-contributor https://orcid.org/0000-0002-2908-3327
 relationship: only_in_taxon NCBITaxon:6830 ! Copepoda
 relationship: part_of UBERON:0000113 ! post-juvenile adult stage
 relationship: preceded_by UBERON:8200005 ! copepodite stage 4
@@ -221657,7 +221657,7 @@ id: UBERON:8200007
 name: copepodite stage 6
 def: "A fully formed stage of copepods which immediately follows copepodite stage 5. It is characterized by the complete development of the fifth swimming leg." [http://orcid.org/0000-0002-2908-3327]
 is_a: UBERON:0000105 ! life cycle stage
-relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 ! Anne Thessen
+relationship: dc-contributor https://orcid.org/0000-0002-2908-3327
 relationship: only_in_taxon NCBITaxon:6830 ! Copepoda
 relationship: part_of UBERON:0000066 ! fully formed stage
 relationship: preceded_by UBERON:8200006 ! copepodite stage 5
@@ -222849,7 +222849,7 @@ is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain
 relationship: capable_of_part_of GO:0007601 ! visual perception
 relationship: contributes_to_morphology_of UBERON:0000956 ! cerebral cortex
 relationship: contributes_to_morphology_of UBERON:0002021 ! occipital lobe
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 relationship: in_taxon NCBITaxon:9443 ! Primates
 relationship: part_of UBERON:0000411 {source="WP"} ! visual cortex
 property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/7/70/Brodmann_areas_17_18_19.png" xsd:anyURI
@@ -222861,7 +222861,7 @@ def: "The part of the cortex that is responsible for processing visual informati
 intersection_of: UBERON:0035014 ! functional part of brain
 intersection_of: capable_of_part_of GO:0007601 ! visual perception
 intersection_of: part_of UBERON:0000956 ! cerebral cortex
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 
 [Term]
 id: UBERON:8440012
@@ -223143,7 +223143,7 @@ synonym: "lateral tuberal nucleus (sensu Rodentia)" EXACT [PMID:29976812]
 xref: DMBA:16271
 xref: MBA:614
 is_a: UBERON:0002308 ! nucleus of brain
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 relationship: in_taxon NCBITaxon:9989 ! Rodentia
 relationship: part_of UBERON:0001898 ! hypothalamus
 property_value: curator_notes "Lateral tuberal nucleus is listed as both an exact synonym and related synonym as the term has been used in both ways. See https://github.com/obophenotype/uberon/issues/2439 for more details. No homology links has been made as this is unclear from the literature." xsd:string
@@ -223155,7 +223155,7 @@ def: "A prominent nucleus located in the ventral tuberal area of Teleostei that
 comment: This term is used specifically for fish (or Teleostei in general) as lateral tuberal nucleus (UBERON:0000435) refers to a structure that is specific to humans and higher primates. See https://github.com/obophenotype/uberon/issues/2439 for more details. {xref="PMID:1362279"}
 synonym: "NLT system (sensu Teleostei)" EXACT [DOI:10.1016/0016-6480(71)90165-1]
 is_a: UBERON:0001937 ! lateral hypothalamic nucleus
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 relationship: in_taxon NCBITaxon:32443 ! Teleostei
 
 [Term]
@@ -223164,14 +223164,14 @@ name: superior paraolivary nucleus
 def: "A structure embedded in the superior olivary complex that is driven by input pathways from the octopus cells in the cochlear nucleus and the neurons of the medial nucleus of the trapezoid body." [DOI:10.1093/oxfordhb/9780190849061.013.11]
 synonym: "SPON" EXACT [DOI:10.1093/oxfordhb/9780190849061.013.11]
 is_a: UBERON:0007247 ! nucleus of superior olivary complex
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 
 [Term]
 id: UBERON:8440044
 name: upper layers of the cortex
 def: "A laminar subdivision of the neocortex that is comprised of the more surface layers, commonly layers two through four." [DOI:10.1101/2022.10.12.511898]
 is_a: UBERON:8440004 ! laminar subdivision of the cortex
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 
 [Term]
 id: UBERON:8440045
@@ -223252,7 +223252,7 @@ id: UBERON:8440051
 name: lower layers of the cortex
 def: "A laminar subdivision of the neocortex that is comprised of the deeper layers, commonly layers five and six, however, could also consist part of layer four." [DOI:10.1101/2022.10.12.511898]
 is_a: UBERON:8440004 ! laminar subdivision of the cortex
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 
 [Term]
 id: UBERON:8440052
@@ -223445,7 +223445,7 @@ synonym: "LTN" EXACT ABBREVIATION [MBA:283]
 xref: MBA:283
 xref: neuronames:1957
 is_a: UBERON:0002308 ! nucleus of brain
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 relationship: dorsal_to UBERON:0007632 ! Barrington's nucleus
 relationship: part_of UBERON:0003023 ! pontine tegmentum
 relationship: ventral_to UBERON:0002148 ! locus ceruleus
@@ -223457,7 +223457,7 @@ def: "A nucleus of the brain that is the most ventral portion of the gigantocell
 synonym: "MARN" EXACT ABBREVIATION [MBA:307]
 xref: MBA:307
 is_a: UBERON:0002308 ! nucleus of brain
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 relationship: part_of UBERON:0002155 ! gigantocellular nucleus
 relationship: part_of UBERON:0025525 ! motor system
 
@@ -223471,7 +223471,7 @@ synonym: "ISVe" EXACT ABBREVIATION [NeuroNames:719]
 xref: MBA:76
 xref: NeuroNames:719
 is_a: UBERON:0000125 ! neural nucleus
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 relationship: part_of UBERON:0002731 ! vestibulocochlear nerve root
 
 [Term]
@@ -223481,7 +223481,7 @@ def: "The part of the cerebral cortex that is responsible for the perception of
 synonym: "gustatory area" EXACT [MBA:1057]
 xref: MBA:1057
 is_a: UBERON:0002616 ! regional part of brain
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 relationship: part_of UBERON:0000956 ! cerebral cortex
 relationship: part_of UBERON:0001033 ! gustatory system
 
@@ -223491,7 +223491,7 @@ name: somatomotor area
 def: "A part of the cerebral cortex that comprises of the primary motor cortex and the premotor cortex." [MBA:500]
 xref: MBA:500
 is_a: UBERON:0002616 ! regional part of brain
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 relationship: has_part UBERON:0001384 ! primary motor cortex
 relationship: has_part UBERON:0016634 ! premotor cortex
 
@@ -223504,7 +223504,7 @@ is_a: UBERON:0000464 ! anatomical space
 relationship: adjacent_to UBERON:0007193 ! orbital gyrus
 relationship: adjacent_to UBERON:0015800 ! taenia tectum of brain
 relationship: adjacent_to UBERON:8440033 ! infralimbic area
-relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 relationship: present_in_taxon NCBITaxon:10090 {xref="MBA:1078"} ! Mus musculus
 relationship: present_in_taxon NCBITaxon:10114 {xref="NeuroNames:1975"} ! Rattus
 
@@ -224223,6 +224223,14 @@ intersection_of: part_of UBERON:0007318 ! saphenous vein
 relationship: dc-contributor https://orcid.org/0000-0002-0819-0473
 property_value: dcterms-date "2023-08-31T11:41:09Z" xsd:dateTime
 
+[Term]
+id: UBERON:8480069
+name: temporofacial region
+def: "The region at each side of the face comprising the temple and the cheek." [https://orcid.org/0000-0002-0819-0473]
+is_a: UBERON:0001444 ! subdivision of head
+relationship: dc-contributor https://orcid.org/0000-0002-0819-0473
+property_value: dcterms-date "2023-09-18T06:03:43Z" xsd:dateTime
+
 [Term]
 id: UBERON:8480071
 name: skin of lobe of tail