Skip to content

Commit

Permalink
use curator_notes instead of notes
Browse files Browse the repository at this point in the history
  • Loading branch information
anitacaron committed Oct 16, 2023
1 parent 31e44ac commit dfdfc3d
Show file tree
Hide file tree
Showing 2 changed files with 2 additions and 3 deletions.
4 changes: 2 additions & 2 deletions src/ontology/uberon-edit.obo
Original file line number Diff line number Diff line change
Expand Up @@ -47726,7 +47726,7 @@ property_value: external_definition "Post-cranial axial segments which form scle
property_value: external_definition "Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000155", ontology="TAO", source="ZFIN:curator"}
property_value: has_relational_adjective "somitic" xsd:string
property_value: homology_notes "(...) cephalocordates and craniates belong to a group known as Somitichordata. Somitichordate synapomorphies include (1) somites (...) (reference 1); The idea that the last common ancestor of bilaterian animals (Urbilateria) was segmented has been raised recently on evidence coming from comparative molecular embryology (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000191", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.40, DOI:10.1093/icb/43.1.137 Balavoine G, Adoutte A, The segmented urbilateria: a testable scenario. Integrative and Comparative Biology (2003)", source="http://bgee.unil.ch/"}
property_value: notes "currently classified as an epithelial vesicle, consistent with EHDAA2 and https://github.com/obophenotype/uberon/wiki/The-neural-crest. Consider making 'somitic mesoderm' a separate term and correlate with regionalization processes. Consider moving ZFA term to 'trunk somite' as it is part of the trunk" xsd:string
property_value: curator_notes "currently classified as an epithelial vesicle, consistent with EHDAA2 and https://github.com/obophenotype/uberon/wiki/The-neural-crest. Consider making 'somitic mesoderm' a separate term and correlate with regionalization processes. Consider moving ZFA term to 'trunk somite' as it is part of the trunk" xsd:string

[Term]
id: UBERON:0002330
Expand Down Expand Up @@ -48081,7 +48081,7 @@ property_value: external_definition "A cell population arising from the dorsolat
property_value: external_definition "Migratory cell population which delaminates from neural tube, borders surface ectoderm and neural ectoderm, and gives rise to many different tissue types.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010578", ontology="AAO", source="AAO:EJS"}
property_value: homology_notes "A well developed neural crest population is present in lampreys (Horigome et al. 1999 ; Tomsa & Langeland, 1999) and gnathostomes. chordate fossils from the early Cambrian (Yunnanozoan and Haikouella) with apparent neural-crest derived structures (pharyngeal denticles and pharyngeal skeletons resembling the striped mucocartilage of the branchial bars in lamprey ammocoete larvae), suggests that neural crest arose very early in vertebrate evolution (Chen et al. 1999; Holland & Chen, 2001). The invertebrate chordates apparently lack defini- tive neural crest. One marker of migrating neural crest in some vertebrates, the antibody HNK1, does not recognize any cells in amphioxus embryos (Holland, unpublished). Even so, in both amphioxus and tunicates, cells at the edges of the neural plate and adjacent nonneural ectoderm share some properties of neural crest[PMID:11523831]" xsd:string {source="PMID:11523831"}
property_value: homology_notes "We conclude that the neural crest is a vertebrate novelty, but that neural crest cells and their derivatives evolved and diversified in a step-wise fashion - first by elaboration of neural plate border cells, then by the innovation or co-option of new or ancient metazoan cell fates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000057", ontology="VHOG", source="DOI:10.1111/j.1469-7580.2012.01495.x Hall BK, Gillis JA, Incremental evolution of the neural crest, neural crest cells and neural crest-derived skeletal tissues. J Anat (2012)", source="http://bgee.unil.ch/"}
property_value: notes "consider including subclasses for pre- and post- migratory (e.g. sheets/paths/streams)." xsd:string
property_value: curator_notes "consider including subclasses for pre- and post- migratory (e.g. sheets/paths/streams)." xsd:string

[Term]
id: UBERON:0002343
Expand Down
1 change: 0 additions & 1 deletion src/sparql/illegal-annotation-property-violation.sparql
Original file line number Diff line number Diff line change
Expand Up @@ -70,7 +70,6 @@ SELECT DISTINCT ?annotation WHERE {
<http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym>,
<http://www.geneontology.org/formats/oboInOwl#id>,
<http://www.geneontology.org/formats/oboInOwl#inSubset>,
<http://www.geneontology.org/formats/oboInOwl#notes>,
<http://www.w3.org/2000/01/rdf-schema#comment>,
<http://www.w3.org/2000/01/rdf-schema#label>,
<http://www.w3.org/2000/01/rdf-schema#seeAlso>,
Expand Down

0 comments on commit dfdfc3d

Please sign in to comment.