Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium

.github/workflows/diff.yml

@@ -10,7 +10,7 @@ env:
 # A workflow run is made up of one or more jobs that can run sequentially or in parallel
 jobs:
   branch_status:
-    if: ${{ github.event.issue.pull_request }}
+    if: ${{ github.event.issue.pull_request && github.event.issue.state == 'open' }}
     runs-on: ubuntu-latest
     permissions:
       contents: read

.gitignore

@@ -113,6 +113,7 @@ src/ontology/ed_definitions_merged.owl
 src/ontology/imports/*.obo
 imports/*.obo
 uberon-lastbuild.owl
+uberon-lastbuild.obo
 src/mappings/uberon-local.sssom.tsv
 src/mappings/uberon.sssom.tsv
 src/ontology/imports/*_terms_combined.txt

src/ontology/reports/uberon-edit.obo-obo-report.tsv

@@ -1327,7 +1327,7 @@ WARN	duplicate_scoped_synonym	UBERON:0004717	oboInOwl:hasBroadSynonym	B09-29
 WARN	duplicate_scoped_synonym	UBERON:0004717	oboInOwl:hasExactSynonym	B09-29
 WARN	duplicate_scoped_synonym	UBERON:0004718	oboInOwl:hasBroadSynonym	B09-26
 WARN	duplicate_scoped_synonym	UBERON:0004718	oboInOwl:hasExactSynonym	B09-26
-WARN	duplicate_scoped_synonym	UBERON:0004726	oboInOwl:hasExactSynonym	arteriolae rectae renis
+WARN	duplicate_scoped_synonym	UBERON:0004726	oboInOwl:hasNarrowSynonym	arteriolae rectae renis
 WARN	duplicate_scoped_synonym	UBERON:0004726	oboInOwl:hasRelatedSynonym	arteriolae rectae renis
 WARN	duplicate_scoped_synonym	UBERON:0004918	oboInOwl:hasExactSynonym	musculus sphincter urethrae internus
 WARN	duplicate_scoped_synonym	UBERON:0004918	oboInOwl:hasRelatedSynonym	musculus sphincter urethrae internus
@@ -1954,7 +1954,6 @@ WARN	missing_definition	IAO:0000115	IAO:0000115
 WARN	missing_definition	IAO:0000116	IAO:0000115	
 WARN	missing_definition	IAO:0000232	IAO:0000115	
 WARN	missing_definition	IAO:0000233	IAO:0000115	
-WARN	missing_definition	IAO:0000425	IAO:0000115	
 WARN	missing_definition	IAO:0000700	IAO:0000115	
 WARN	missing_definition	IAO:0006012	IAO:0000115	
 WARN	missing_definition	IAO:0100001	IAO:0000115	
@@ -1978,9 +1977,13 @@ WARN	missing_definition	RO:0002134	IAO:0000115
 WARN	missing_definition	RO:0002150	IAO:0000115	
 WARN	missing_definition	RO:0002158	IAO:0000115	
 WARN	missing_definition	RO:0002159	IAO:0000115	
+WARN	missing_definition	RO:0002161	IAO:0000115	
 WARN	missing_definition	RO:0002162	IAO:0000115	
 WARN	missing_definition	RO:0002170	IAO:0000115	
 WARN	missing_definition	RO:0002171	IAO:0000115	
+WARN	missing_definition	RO:0002173	IAO:0000115	
+WARN	missing_definition	RO:0002174	IAO:0000115	
+WARN	missing_definition	RO:0002175	IAO:0000115	
 WARN	missing_definition	RO:0002176	IAO:0000115	
 WARN	missing_definition	RO:0002177	IAO:0000115	
 WARN	missing_definition	RO:0002178	IAO:0000115	
@@ -2019,9 +2022,11 @@ WARN	missing_definition	RO:0002385	IAO:0000115
 WARN	missing_definition	RO:0002387	IAO:0000115	
 WARN	missing_definition	RO:0002433	IAO:0000115	
 WARN	missing_definition	RO:0002473	IAO:0000115	
+WARN	missing_definition	RO:0002475	IAO:0000115	
 WARN	missing_definition	RO:0002488	IAO:0000115	
 WARN	missing_definition	RO:0002489	IAO:0000115	
 WARN	missing_definition	RO:0002491	IAO:0000115	
+WARN	missing_definition	RO:0002492	IAO:0000115	
 WARN	missing_definition	RO:0002493	IAO:0000115	
 WARN	missing_definition	RO:0002494	IAO:0000115	
 WARN	missing_definition	RO:0002495	IAO:0000115	
@@ -7645,6 +7650,7 @@ INFO	missing_superclass	UBERON:8410080	rdfs:subClassOf
 INFO	missing_superclass	UBERON:8420000	rdfs:subClassOf	
 INFO	missing_superclass	UBERON:8440011	rdfs:subClassOf	
 INFO	missing_superclass	UBERON:8450002	rdfs:subClassOf	
+INFO	missing_superclass	UBERON:8450003	rdfs:subClassOf	
 INFO	missing_superclass	UBERON:8470000	rdfs:subClassOf	
 INFO	missing_superclass	UBERON:8480000	rdfs:subClassOf	
 INFO	missing_superclass	UBERON:8480001	rdfs:subClassOf