failed attempt to go to springer nature template for Computational St…

…atistics.

.gitignore

@@ -44,4 +44,9 @@ vignettes/*.pdf
 template/sample.aux
 template/sample.bbl
 template/sample.log
-template/sample.synctex.gz
+template/sample.synctex.gz
+
+paper.pdf
+paper.html
+paper.tex
+jss.zip

jss/cheem_paper.Rmd

@@ -1,5 +1,9 @@
 ---
-documentclass: jss
+output:
+  #bookdown::html_document2: default
+  bookdown::pdf_document2:
+    keep_tex: true
+#documentclass: sn-jnl
 author:
   - name: Nicholas Spyrison
     orcid: 0000-0002-8417-0212
@@ -34,7 +38,8 @@ keywords:
 preamble: >
   \usepackage{amsmath}
   \usepackage{datetime}
-output: rticles::jss_article
+  \usepackage{subfig}
+#output: rticles::arxiv_article
 bibliography: paper.bib
 ---
 

jss/sn-bibliography.bib

@@ -0,0 +1,163 @@
+%% Journal article
+@article{bib1,
+  author		= "Campbell, S. L. and Gear, C. W.",
+  title			= "The index of general nonlinear {D}{A}{E}{S}",
+  journal		= "Numer. {M}ath.",
+  volume		= "72",
+  number		= "2",
+  pages			= "173--196",
+  year			= "1995"
+}
+
+%% Journal article with DOI
+@article{bib2,
+  author		= "Slifka, M. K. and Whitton, J. L.",
+  title			= "Clinical implications of dysregulated cytokine production",
+  journal		= "J. {M}ol. {M}ed.",
+  volume		= "78",
+  pages			= "74--80",
+  year			= "2000",
+  doi			= "10.1007/s001090000086"
+}
+
+%% Journal article
+@article{bib3,
+  author		= "Hamburger, C.",
+  title			= "Quasimonotonicity, regularity and duality for nonlinear systems of 
+					partial differential equations",
+  journal		= "Ann. Mat. Pura. Appl.",
+  volume		= "169",
+  number		= "2",
+  pages			= "321--354",
+  year			= "1995"
+}
+
+%% book, authored
+@book{bib4,
+  author		= "Geddes, K. O. and Czapor, S. R. and Labahn, G.",
+  title			= "Algorithms for {C}omputer {A}lgebra",
+  address		= "Boston",
+  publisher		= "Kluwer",
+  year			= "1992"
+}
+
+%% Item 8. Book, chapter
+@incollection{bib5,
+  author		= "Broy, M.",
+  title			= "Software engineering---from auxiliary to key technologies",
+  editor		= "Broy, M. and Denert, E.",
+  booktitle		= "Software Pioneers",
+  pages			= "10--13",
+  address		= "New {Y}ork",
+  publisher		= "Springer",
+  year			= "1992"
+}
+
+%% Book, edited
+@book{bib6,
+  editor		= "Seymour, R. S.",
+  title			= "Conductive {P}olymers",
+  address		= "New {Y}ork",
+  publisher		= "Plenum",
+  year			= "1981"
+}
+
+%% Chapter in a book in a series with volume titles
+@inproceedings{bib7,
+  author		= "Smith, S. E.",
+  title			= "Neuromuscular blocking drugs in man",
+  editor		= "Zaimis, E.",
+  volume		= "42",
+  booktitle		= "Neuromuscular junction. {H}andbook of experimental pharmacology",
+  pages			= "593--660",
+  address		= "Heidelberg",
+  publisher		= "Springer",
+  year			= "1976"
+}
+
+%% Paper presented at a conference
+@misc{bib8,
+  author		= "Chung, S. T. and Morris, R. L.",
+  title			= "Isolation and characterization of plasmid deoxyribonucleic acid from 
+					Streptomyces fradiae",
+  year			= "1978",
+  note			= "Paper presented at the 3rd international symposium on the genetics 
+					of industrial microorganisms, University of {W}isconsin, {M}adison, 
+					4--9 June 1978"
+}
+
+%% Data citation example
+@misc{bib9,
+  author		= "Hao, Z. and AghaKouchak, A. and Nakhjiri, N. and Farahmand, A.",
+  title			= "Global integrated drought monitoring and prediction system (GIDMaPS) data sets", 
+  year			= "2014",
+  note			= "figshare \url{https://doi.org/10.6084/m9.figshare.853801}"
+}
+
+%% Preprint citation example
+@misc{bib10, 
+  author		= "Babichev, S. A. and Ries, J. and Lvovsky, A. I.",
+  title			= "Quantum scissors: teleportation of single-mode optical states by means 
+					of a nonlocal single photon", 
+  year			= "2002",
+  note			= "Preprint at \url{https://arxiv.org/abs/quant-ph/0208066v1}"
+}
+
+@article{bib11,
+  author		= "Beneke, M. and Buchalla, G. and Dunietz, I.",
+  title			= "Mixing induced {CP} asymmetries in inclusive {B} decays",
+  journal		= "Phys. {L}ett.",
+  volume		= "B393",
+  year			= "1997",
+  pages			= "132-142",
+  archivePrefix		= "arXiv",
+  eprint		= "0707.3168",
+  primaryClass		= "gr-gc"
+}
+
+@softmisc{bib12,
+  author		= "Stahl, B.",
+  title			= "deep{SIP}: deep learning of {S}upernova {I}a {P}arameters",
+  version		= "0.42",
+  keywords		= "Software",
+  howpublished		= "Astrophysics {S}ource {C}ode {L}ibrary",
+  year			= "2020",
+  month			= "Jun",
+  eid			= "ascl:2006.023",
+  pages			= "ascl:2006.023",
+  archivePrefix		= "ascl",
+  eprint		= "2006.023",
+  adsurl		= "{https://ui.adsabs.harvard.edu/abs/2020ascl.soft06023S}",
+  adsnote		= "Provided by the SAO/NASA Astrophysics Data System"
+}
+
+@article{bib13,
+  author = "Abbott, T. M. C. and others",
+  collaboration = "DES",
+  title = "{Dark Energy Survey Year 1 Results: Constraints on Extended Cosmological Models from Galaxy Clustering and Weak Lensing}",
+  eprint = "1810.02499",
+  archivePrefix = "arXiv",
+  primaryClass = "astro-ph.CO",
+  reportNumber = "FERMILAB-PUB-18-507-PPD",
+  doi = "10.1103/PhysRevD.99.123505",
+  journal = "Phys. Rev. D",
+  volume = "99",
+  number = "12",
+  pages = "123505",
+  year = "2019"
+}
+
+%%============================================================================%%
+%% while using chicago reference style, both abbreviated and expanded form of %%
+%% author name format is acceptable. Refer below example for expanded form    %%
+%%============================================================================%%
+
+%%  author		= "{Cameron, Deborah}", - single author
+%%  author		= "{Saito, Yukio} and {Hyuga, Hiroyuki}", - double author 
+
+%%======================================%%
+%% Example for author names with suffix %%
+%%======================================%%
+
+%%  author		= "{Price, R. A. Jr} and {Curry, N. {III}} and McCann, K. E. and 
+%%					Fielding, J. L. and {Abercrombie, E. Jr}",