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Issues: nipy/dmriprep

33 Open 21 Closed
33 Open 21 Closed
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Issues list

dMRIprep 0.5.0: No folder output dir of dwi created
#115 opened Apr 26, 2021 by nabaruns
5
Use get_bval and get_bvec to get bval/bvec files
#101 opened Jul 9, 2019 by arokem
@arokem @richford
Doesn't work with no field maps
#98 opened Jun 28, 2019 by arokem
Replace Freesurfer registration with DIPY-based registration
#84 opened Apr 22, 2019 by arokem
Two phase encode directions, but no field maps
#83 opened Apr 19, 2019 by arokem
Handle cases where field-map is collected with a different resolution than the dwi
#82 opened Apr 19, 2019 by arokem
1
Handle multiple runs in the same session
#81 opened Apr 18, 2019 by arokem
Add a docker entry point
#73 opened Mar 25, 2019 by arokem
End-to-end testing
#71 opened Mar 25, 2019 by arokem
make a CLI that would run docker with the dependencies in it
#70 opened Mar 25, 2019 by arokem
@akeshavan @richford
1
Longitudinal pipeline
#68 opened Mar 13, 2019 by araikes
regenerate neurodocker docker file with min version of Freesurfer
#66 opened Mar 8, 2019 by akeshavan
For data.Study object, maybe the s3_prefix input should default to None?
#63 opened Feb 25, 2019 by arokem
ENH: Optional preprocessing steps for denoising, unringing and upsampling
#62 opened Feb 21, 2019 by josephmje
3
Cloudknot Freesurfer
#59 opened Feb 5, 2019 by arokem
ENH: Two pipelines
#58 opened Feb 4, 2019 by richford
4
nibabel get_data vs get_fdata
#55 opened Dec 18, 2018 by akeshavan
5
add another postprocessing step to HBN study data -- rename AP/PA fmaps
#54 opened Dec 18, 2018 by akeshavan
@akeshavan @richford
Create a hash of subject's files after downloading
#47 opened Dec 11, 2018 by richford
@richford
write a nipype interface for eddy_qc
#46 opened Dec 11, 2018 by akeshavan OHBM
@akeshavan @richford
Write Tests
#45 opened Dec 11, 2018 by richford OHBM
@akeshavan @richford
prepare datasets for all use cases
#30 opened Dec 5, 2018 by akeshavan
@arokem
1
no topup for when there is only one phase encode
#29 opened Dec 5, 2018 by jyeatman
does the target for dmriprep allow things like brainstem and spinal cord scans?
#24 opened Dec 4, 2018 by satra
1
Manuscript
#22 opened Nov 28, 2018 by jyeatman
@jyeatman
ProTip! Follow long discussions with comments:>50.