Final bug fixes before submitting the paper #7
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MaartenPostuma
commented
Oct 12, 2021
MaartenPostuma
commented
- Delete the bismark output (CHH_OTOB etc.) as it takes up a lot of disk space.
- add --scaffolds to the reference branch so it can use references with scaffolds
- Fixed some dependencies in the bismark.yaml that caused it to not work on some systems
- updated annotation of code
added 30 commits
January 20, 2021 12:09
….bioinf.nioo.knaw.nl/MaartenP1/epigbs2 added epiDiverse SNP calling
Added adam epidiverse SNP calling. See merge request pipelines/epigbs2!6
Adding correct multiqc support and secret parameterTest rules See merge request pipelines/epigbs2!7
… some other servers in the world aswell)
…hich were in use + fixed data.frame not being populated properly
This is to ensure that epiGBS does not use massive amounts of diskspace.
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@MaartenPostuma , could you please check the following conflicting files: data/README.md As mentioned above, they can only be fixed on the command line. In case you need help, please let me know. |
- edited some typo's - added creation of the snake env with mamba to the preparation section - added the zenodo link
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