Add first version of implementation of block multicolour Gibbs sampler #215
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| name: ubuntu | |
| on: [push] | |
| jobs: | |
| run-tests: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ubuntu | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install dependencies | |
| run: | | |
| export DEBIAN_FRONTEND=noninteractive | |
| apt update | |
| apt install -y wget gpg build-essential cmake pipx flex bison gfortran pkg-config libfftw3-dev | |
| wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null | |
| echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | tee /etc/apt/sources.list.d/oneAPI.list | |
| apt update | |
| apt install -y intel-oneapi-mkl intel-oneapi-mkl-devel python3-dev python3-pip python3-venv python3-virtualenv git | |
| pipx install lit | |
| pipx ensurepath | |
| echo "/github/home/.local/bin" >> $GITHUB_PATH | |
| - name: Cache PETSc | |
| id: cache-petsc | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{github.workspace}}/petsc | |
| key: ${{runner.os}}-petsc | |
| - name: Build PETSc | |
| if: steps.cache-petsc.outputs.cache-hit != 'true' | |
| run: | | |
| git clone --depth 1 --branch v3.21.5 https://gitlab.com/petsc/petsc.git petsc | |
| cd petsc | |
| ./configure --with-debugging=no --download-mpich --with-fortran-bindings=0 --with-blas-lapack-dir=/opt/intel/oneapi/mkl/latest/lib --with-mkl_cpardiso --with-mkl_pardiso --download-scalapack --download-triangle --download-ctetgen --download-parmetis --download-metis --download-mmg --download-ptscotch COPTFLAGS="-O3 -march=native" CXXOPTFLAGS="-O3 -march=native" | |
| make PETSC_DIR=${GITHUB_WORKSPACE}/petsc PETSC_ARCH=arch-linux-c-opt all | |
| - name: Build ParMGMC | |
| run: | | |
| mkdir build && cd build | |
| cmake .. -DCMAKE_C_COMPILER=${GITHUB_WORKSPACE}/petsc/arch-linux-c-opt/bin/mpicc -DCMAKE_CXX_COMPILER=${GITHUB_WORKSPACE}/petsc/arch-linux-c-opt/bin/mpic++ -DCMAKE_PREFIX_PATH=${GITHUB_WORKSPACE}/petsc/arch-linux-c-opt -DCMAKE_INSTALL_PREFIX=${GITHUB_WORKSPACE}/install | |
| make | |
| - name: Install ParMGMC | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/build | |
| make install | |
| - name: Configure tests | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/examples | |
| mkdir build && cd build | |
| cmake .. -DCMAKE_PREFIX_PATH="${GITHUB_WORKSPACE}/petsc/arch-linux-c-opt;${GITHUB_WORKSPACE}/install" | |
| - name: Run sequential tests | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/examples/build | |
| make check-seq | |
| - name: Run parallel tests | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/examples/build | |
| export LD_PRELOAD=/opt/intel/oneapi/mkl/latest/lib/libmkl_blacs_intelmpi_lp64.so | |
| make check-par |