Added specific packages and dependencies

Dockerfile

@@ -2,33 +2,73 @@ FROM rocker/r-ubuntu:22.04
 
 ADD Rprofile.site /usr/lib/R/etc/Rprofile.site
 
+# https://github.com/jlacko/RCzechia/blob/master/data-raw/Dockerfile
+# for GDAL use
+RUN apt-get update && apt-get -y install libexpat-dev
+
+# for GEOS use
+RUN apt-get update && apt-get -y install libsqlite3-dev
+
+# the big three - cruel & unusual versions from source (takes about forever; should be on top of the dockerfile)
+
 RUN apt-get update \
  && apt-get upgrade -y
 
 RUN wget https://github.com/quarto-dev/quarto-cli/releases/download/v1.4.550/quarto-1.4.550-linux-amd64.deb \
     && DEBIAN_FRONTEND=noninteractive apt install ./quarto-*-linux-amd64.deb \
     && rm quarto-*-linux-amd64.deb
 
-# stuff for the tmaptools/rmapshaper/geojsonio etc stack:
-RUN apt-get install -y libv8-3.14-dev libprotobuf-dev protobuf-compiler libcairo2-dev
-RUN add-apt-repository -y ppa:opencpu/jq
-RUN apt-get update
-RUN apt-get install -y libjq-dev
+RUN apt-get clean \
+ && rm -rf /var/lib/apt/lists/*
 
-RUN Rscript -e 'install.packages(c("sf", "lwgeom", "covr", "raster"), dependencies = TRUE, repos = "https://cloud.r-project.org")'
-RUN git clone   https://github.com/r-spatial/sf.git
-RUN R CMD build --no-build-vignettes sf
-RUN R CMD INSTALL sf_*tar.gz
+RUN R -q -e 'install.packages("remotes"); remotes::install_github("rundel/checklist")'
 
-RUN apt-get install -y pandoc pandoc-citeproc
+# PROJ
+RUN cd \
+	&& wget http://download.osgeo.org/proj/proj-4.9.3.tar.gz \
+	&& tar zxvf proj-4.9.3.tar.gz  \
+	&& cd proj-4.9.3/ \
+	&& ./configure \
+	&& make -j $(nproc) \
+	&& make install
 
-RUN R CMD check --as-cran sf_*tar.gz
+# GDAL
+RUN	cd \
+	&& wget http://download.osgeo.org/gdal/2.2.3/gdal-2.2.3.tar.gz \
+	&& tar zxvf gdal-2.2.3.tar.gz  \
+	&& cd gdal-2.2.3 \
+	&& ./configure \
+	&& make -j $(nproc) \
+	&& make install
 
+# GEOS
+RUN	cd \
+	&& wget http://download.osgeo.org/geos/geos-3.6.2.tar.bz2 \
+	&& bunzip2  geos-3.6.2.tar.bz2  \
+	&& tar xvf geos-3.6.2.tar  \
+	&& cd geos-3.6.2 \
+	&& ./configure \
+	&& make -j $(nproc)\
+	&& make install
 
-RUN apt-get clean \
- && rm -rf /var/lib/apt/lists/*
+# other required packages; standard versions suffice...
+# absolutely positively required on a single line (bo update a instal must be in the same keš)
+RUN apt-get update && apt-get -y install libudunits2-dev
+RUN apt-get update && apt-get -y install libxml2-dev
+RUN apt-get update && apt-get -y install libv8-dev
+RUN apt-get update && apt-get -y install libjq-dev
+RUN apt-get update && apt-get -y install libprotobuf-dev
+RUN apt-get update && apt-get -y install protobuf-compiler
+RUN apt-get update && apt-get -y install libxtst6
+RUN apt-get update && apt-get -y install libfontconfig1-dev
+RUN apt-get update && apt-get -y install libharfbuzz-dev
+RUN apt-get update && apt-get -y install libfribidi-dev
+RUN apt-get update && apt-get -y install libfreetype6-dev
+RUN apt-get update && apt-get -y install libpng-dev
+RUN apt-get update && apt-get -y install libtiff5-dev
+RUN apt-get update && apt-get -y install libjpeg-dev
+RUN ldconfig
 
-RUN R -q -e 'install.packages("remotes"); remotes::install_github("rundel/checklist")'
 
 CMD ["bash"]