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Implemented TMB score calculation #1738

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Implemented TMB score calculation #1738

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bounlu
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@bounlu bounlu commented Nov 20, 2024

Implements #495 based on pyTMB.py starting from draft by @FriederikeHanssen

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
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  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 2.14.1.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@bounlu bounlu closed this Nov 20, 2024
@bounlu bounlu deleted the TMB branch November 20, 2024 06:59
@bounlu bounlu restored the TMB branch November 20, 2024 07:00
@bounlu bounlu reopened this Nov 20, 2024
@FriederikeHanssen
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Amazing 🌟 Looks like this PR also contains the MSISENSOR changes? @Patricie34 is also implementing variant normalisation over in #1682 , can these efforts be combined/ is that implementation something you can build on?

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