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Update tests/test_normalize_vcfs.yml
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Co-authored-by: Friederike Hanssen <[email protected]>
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Patricie34 and FriederikeHanssen authored Nov 20, 2024
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2 changes: 1 addition & 1 deletion tests/test_normalize_vcfs.yml
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- name: Run all variant callers and check for existence of normalized vcf-files
command: nextflow run main.nf -profile test,docker --input ./tests/csv/3.0/mapped_joint_bam.csv --normalize_vcfs --tools deepvariant,freebayes,haplotypecaller,manta,mpileup,strelka,tiddit --step variant_calling --outdir results
command: nextflow run main.nf -profile test --input ./tests/csv/3.0/mapped_joint_bam.csv --normalize_vcfs --tools deepvariant,freebayes,haplotypecaller,manta,mpileup,strelka,tiddit --step variant_calling --outdir results
tags:
- normalize_vcfs
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