fix: Update regtools version extraction regex in junctionsextract module

nf-core · Nov 20, 2024 · 3a185f6 · 3a185f6
1 parent f75790e
commit 3a185f6
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Showing 2 changed files with 22 additions and 8 deletions.
diff --git a/modules/nf-core/regtools/junctionsextract/main.nf b/modules/nf-core/regtools/junctionsextract/main.nf
@@ -28,7 +28,7 @@ process REGTOOLS_JUNCTIONSEXTRACT {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        regtools: \$(regtools --version 2>&1 | sed 's/^.*regtools //; s/ .*\$//')
+        regtools: \$(regtools --version 2>&1 | grep "Version:" | sed 's/Version:\t//')
     END_VERSIONS
     """
 
@@ -39,7 +39,7 @@ process REGTOOLS_JUNCTIONSEXTRACT {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        regtools: \$(regtools --version 2>&1 | sed 's/^.*regtools //; s/ .*\$//')
+        regtools: \$(regtools --version 2>&1 | grep "Version:" | sed 's/Version:\t//')
     END_VERSIONS
     """
 }
diff --git a/modules/nf-core/regtools/junctionsextract/tests/main.nf.test.snap b/modules/nf-core/regtools/junctionsextract/tests/main.nf.test.snap
@@ -12,7 +12,7 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,b2432b2a81fb72994ef780a8e979d853"
+                    "versions.yml:md5,b8a1d662548217fc4607214fb7b4f42c"
                 ],
                 "junc": [
                     [
@@ -24,15 +24,29 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,b2432b2a81fb72994ef780a8e979d853"
+                    "versions.yml:md5,b8a1d662548217fc4607214fb7b4f42c"
                 ]
             }
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "24.10.1"
         },
-        "timestamp": "2024-11-20T11:29:52.982213"
+        "timestamp": "2024-11-20T13:29:27.373772"
+    },
+    "versions": {
+        "content": [
+            {
+                "REGTOOLS_JUNCTIONSEXTRACT": {
+                    "regtools": "0.5.0"
+                }
+            }
+        ],
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.1"
+        },
+        "timestamp": "2024-11-20T13:29:27.448238"
     },
     "homo_sapiens - bam-bai": {
         "content": [
@@ -47,7 +61,7 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,b2432b2a81fb72994ef780a8e979d853"
+                    "versions.yml:md5,b8a1d662548217fc4607214fb7b4f42c"
                 ],
                 "junc": [
                     [
@@ -59,14 +73,14 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,b2432b2a81fb72994ef780a8e979d853"
+                    "versions.yml:md5,b8a1d662548217fc4607214fb7b4f42c"
                 ]
             }
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "24.10.1"
         },
-        "timestamp": "2024-11-20T11:29:48.572345"
+        "timestamp": "2024-11-20T13:29:23.165022"
     }
 }