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| ## Unreleased | ||
|
|
||
| Initial release of this dataset. |
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| # Nextclade dataset for "Sudan Ebolavirus" | ||
|
|
||
| | Key | Value | | ||
| | ---------------------- | ------------------------------------------------------------------------------- | | ||
| | authors | [Cornelius Roemer](https://neherlab.org), [Richard Neher](https://neherlab.org) | | ||
| | data source | Genbank | | ||
| | nextclade dataset path | nextstrain/ebola/sudan | | ||
| | annotation | [NC_006432.1](https://www.ncbi.nlm.nih.gov/nuccore/NC_006432) | | ||
| | related datasets | Zaire Ebola virus: `nextstrain/ebola/zaire` | |
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data_output/nextstrain/wnv/lineage-1/unreleased/examples.fasta
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data_output/nextstrain/wnv/lineage-1/unreleased/genome_annotation.gff3
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| ##gff-version 3 | ||
| #!gff-spec-version 1.21 | ||
| #!processor NCBI annotwriter | ||
| ##sequence-region NC_009942.1 1 11029 | ||
| ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=11082 | ||
| NC_009942.1 RefSeq region 1 11029 . + . ID=NC_009942.1:1..11029;Dbxref=taxon:11082;country=USA;gb-acronym=WNV;gbkey=Src;genome=genomic;isolate=385-99;mol_type=genomic RNA;note=lineage 1%3B Vero cell passage 2 after isolation;strain=NY99 | ||
| NC_009942.1 RefSeq gene 97 10395 . + . gene=POLY;ID=gene-WNVNY99_gp1;gbkey=Prot;product=anchored capsid protein ancC;protein_id=YP_005097850.1 | ||
| NC_009942.1 RefSeq CDS 6916 7311 . + . ID=id-YP_009246337;Parent=gene-WNVNY99_gp1;gene=NS4BWARF4;Note=The mature peptide consists of the N-terminal portion of NS4B and the translation of the WARF4 open reading frame%2C which is only found in lineage 1 of West Nile virus%3B The existence of the protein has been shown indirectly%3B WARF4 ORF has been added and annotated with the kind help of Dr. David Karlin (Department of Zoology%2C University of Oxford%2C UK);gbkey=Prot;product=N-NS4B/WARF4;protein_id=YP_009246339.1 | ||
| NC_009942.1 RefSeq CDS 7311 7754 . + . ID=id-YP_009246337;Parent=gene-WNVNY99_gp1;gene=NS4BWARF4;Note=The mature peptide consists of the N-terminal portion of NS4B and the translation of the WARF4 open reading frame%2C which is only found in lineage 1 of West Nile virus%3B The existence of the protein has been shown indirectly%3B WARF4 ORF has been added and annotated with the kind help of Dr. David Karlin (Department of Zoology%2C University of Oxford%2C UK);gbkey=Prot;product=N-NS4B/WARF4;protein_id=YP_009246339.1 | ||
| NC_009942.1 RefSeq CDS 2470 3552 . + . ID=id-YP_006485883;Parent=gene-WNVNY99_gp1;gene=NS1prime;Note=NS1'%3B transframe fusion protein expressed via programmed ribosomal frameshifting;gbkey=Prot;product=nonstructural protein NS1 prime;protein_id=YP_009246338.1 | ||
| NC_009942.1 RefSeq CDS 3552 3680 . + . ID=id-YP_006485883;Parent=gene-WNVNY99_gp1;gene=NS1prime;Note=NS1'%3B transframe fusion protein expressed via programmed ribosomal frameshifting;gbkey=Prot;product=nonstructural protein NS1 prime;protein_id=YP_009246338.1 | ||
| NC_009942.1 RefSeq CDS 97 465 . + . gene=ancC;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=anchored capsid protein ancC;protein_id=YP_005097850.1 | ||
| NC_009942.1 RefSeq CDS 466 741 . + . gene=pr;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=protein pr;protein_id=YP_009164953.1 | ||
| NC_009942.1 RefSeq CDS 742 966 . + . gene=M;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=membrane glycoprotein M;protein_id=YP_001527879.1 | ||
| NC_009942.1 RefSeq CDS 967 2469 . + . gene=E;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=envelope protein E;protein_id=YP_001527880.1 | ||
| NC_009942.1 RefSeq CDS 2470 3525 . + . gene=NS1;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=nonstructural protein NS1;protein_id=YP_001527881.1 | ||
| NC_009942.1 RefSeq CDS 3526 4218 . + . gene=NS2A;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=nonstructural protein NS2A;protein_id=YP_001527882.1 | ||
| NC_009942.1 RefSeq CDS 4219 4611 . + . gene=NS2B;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=nonstructural protein NS2B;protein_id=YP_001527883.1 | ||
| NC_009942.1 RefSeq CDS 4612 6468 . + . gene=NS3;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=nonstructural protein NS3;protein_id=YP_001527884.1 | ||
| NC_009942.1 RefSeq CDS 6469 6846 . + . gene=NS4A;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=nonstructural protein NS4A;protein_id=YP_001527885.1 | ||
| NC_009942.1 RefSeq CDS 6847 6915 . + . gene=2K;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=protein 2K;protein_id=YP_001527885.1 | ||
| NC_009942.1 RefSeq CDS 6916 7680 . + . gene=NS4B;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=nonstructural protein NS4B;protein_id=YP_001527886.1 | ||
| NC_009942.1 RefSeq CDS 7681 10395 . + . gene=NS5;Parent=gene-WNVNY99_gp1;gbkey=Prot;product=RNA-dependent RNA polymerase NS5;protein_id=YP_001527887.1 |
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data_output/nextstrain/wnv/lineage-1/unreleased/pathogen.json
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| { | ||
| "alignmentParams": { | ||
| "excessBandwidth": 100, | ||
| "terminalBandwidth": 300, | ||
| "allowedMismatches": 10, | ||
| "windowSize": 40, | ||
| "minSeedCover": 0.03, | ||
| "gapAlignmentSide": "left" | ||
| }, | ||
| "attributes": { | ||
| "name": "West Nile Virus Lineage 1", | ||
| "reference accession": "NC_009942.1", | ||
| "reference name": "NY99" | ||
| }, | ||
| "compatibility": { | ||
| "cli": "3.0.0-alpha.0", | ||
| "web": "3.0.0-alpha.0" | ||
| }, | ||
| "deprecated": false, | ||
| "enabled": true, | ||
| "experimental": true, | ||
| "files": { | ||
| "changelog": "CHANGELOG.md", | ||
| "examples": "examples.fasta", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "pathogenJson": "pathogen.json", | ||
| "readme": "README.md", | ||
| "reference": "reference.fasta" | ||
| }, | ||
| "official": true, | ||
| "qc": { | ||
| "frameShifts": { | ||
| "enabled": true, | ||
| "ignoredFrameShifts": [], | ||
| "scoreWeight": 20 | ||
| }, | ||
| "missingData": { | ||
| "enabled": true, | ||
| "missingDataThreshold": 3000, | ||
| "scoreBias": 500 | ||
| }, | ||
| "mixedSites": { | ||
| "enabled": true, | ||
| "mixedSitesThreshold": 40 | ||
| }, | ||
| "privateMutations": { | ||
| "cutoff": 300, | ||
| "enabled": true, | ||
| "typical": 50, | ||
| "weightLabeledSubstitutions": 6, | ||
| "weightReversionSubstitutions": 6, | ||
| "weightUnlabeledSubstitutions": 1 | ||
| }, | ||
| "snpClusters": { | ||
| "clusterCutOff": 10, | ||
| "enabled": false, | ||
| "scoreWeight": 10, | ||
| "windowSize": 100 | ||
| }, | ||
| "stopCodons": { | ||
| "enabled": true, | ||
| "ignoredStopCodons": [], | ||
| "scoreWeight": 20 | ||
| } | ||
| }, | ||
| "schemaVersion": "3.0.0", | ||
| "shortcuts": [], | ||
| "version": { | ||
| "tag": "unreleased", | ||
| "compatibility": { | ||
| "cli": "3.0.0-alpha.0", | ||
| "web": "3.0.0-alpha.0" | ||
| } | ||
| } | ||
| } |
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data_output/nextstrain/wnv/lineage-1/unreleased/reference.fasta
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| >NC_009942.1 West Nile virus lineage 1, complete genome | ||
| AGTAGTTCGCCTGTGTGAGCTGACAAACTTAGTAGTGTTTGTGAGGATTAACAACAATTAACACAGTGCG | ||
| AGCTGTTTCTTAGCACGAAGATCTCGATGTCTAAGAAACCAGGAGGGCCCGGCAAGAGCCGGGCTGTCAA | ||
| TATGCTAAAACGCGGAATGCCCCGCGTGTTGTCCTTGATTGGACTGAAGAGGGCTATGTTGAGCCTGATC | ||
| GACGGCAAGGGGCCAATACGATTTGTGTTGGCTCTCTTGGCGTTCTTCAGGTTCACAGCAATTGCTCCGA | ||
| CCCGAGCAGTGCTGGATCGATGGAGAGGTGTGAACAAACAAACAGCGATGAAACACCTTCTGAGTTTTAA | ||
| GAAGGAACTAGGGACCTTGACCAGTGCTATCAATCGGCGGAGCTCAAAACAAAAGAAAAGAGGAGGAAAG | ||
| ACCGGAATTGCAGTCATGATTGGCCTGATCGCCAGCGTAGGAGCAGTTACCCTCTCTAACTTCCAAGGGA | ||
| AGGTGATGATGACGGTAAATGCTACTGACGTCACAGATGTCATCACGATTCCAACAGCTGCTGGAAAGAA | ||
| CCTATGCATTGTCAGAGCAATGGATGTGGGATACATGTGCGATGATACTATCACTTATGAATGCCCAGTA | ||
| CTGTCGGCTGGTAATGATCCAGAAGACATCGACTGTTGGTGCACAAAGTCAGCAGTCTACGTCAGGTATG | ||
| GAAGATGCACCAAGACACGCCACTCAAGACGCAGTCGGAGGTCACTGACAGTGCAGACACACGGAGAAAG | ||
| CACTCTAGCGAACAAGAAGGGGGCTTGGATGGACAGCACCAAGGCCACAAGGTATTTGGTAAAAACAGAA | ||
| TCATGGATCTTGAGGAACCCTGGATATGCCCTGGTGGCAGCCGTCATTGGTTGGATGCTTGGGAGCAACA | ||
| CCATGCAGAGAGTTGTGTTTGTCGTGCTATTGCTTTTGGTGGCCCCAGCTTACAGCTTCAACTGCCTTGG | ||
| AATGAGCAACAGAGACTTCTTGGAAGGAGTGTCTGGAGCAACATGGGTGGATTTGGTTCTCGAAGGCGAC | ||
| AGCTGCGTGACTATCATGTCTAAGGACAAGCCTACCATCGATGTGAAGATGATGAATATGGAGGCGGCCA | ||
| ACCTGGCAGAGGTCCGCAGTTATTGCTATTTGGCTACCGTCAGCGATCTCTCCACCAAAGCTGCGTGCCC | ||
| GACCATGGGAGAAGCTCACAATGACAAACGTGCTGACCCAGCTTTTGTGTGCAGACAAGGAGTGGTGGAC | ||
| AGGGGCTGGGGCAACGGCTGCGGACTATTTGGCAAAGGAAGCATTGACACATGCGCCAAATTTGCCTGCT | ||
| CTACCAAGGCAATAGGAAGAACCATCTTGAAAGAGAATATCAAGTACGAAGTGGCCATTTTTGTCCATGG | ||
| ACCAACTACTGTGGAGTCGCACGGAAACTACTCCACACAGGTTGGAGCCACTCAGGCAGGGAGACTCAGC | ||
| ATCACTCCTGCGGCGCCTTCATACACACTAAAGCTTGGAGAATATGGAGAGGTGACAGTGGACTGTGAAC | ||
| CACGGTCAGGGATTGACACCAATGCATACTACGTGATGACTGTTGGAACAAAGACGTTCTTGGTCCATCG | ||
| TGAGTGGTTCATGGACCTCAACCTCCCTTGGAGCAGTGCTGGAAGTACTGTGTGGAGGAACAGAGAGACG | ||
| TTAATGGAGTTTGAGGAACCACACGCCACGAAGCAGTCTGTGATAGCATTGGGCTCACAAGAGGGAGCTC | ||
| TGCATCAAGCTTTGGCTGGAGCCATTCCTGTGGAATTTTCAAGCAACACTGTCAAGTTGACGTCGGGTCA | ||
| TTTGAAGTGTAGAGTGAAGATGGAAAAATTGCAGTTGAAGGGAACAACCTATGGCGTCTGTTCAAAGGCT | ||
| TTCAAGTTTCTTGGGACTCCCGCAGACACAGGTCACGGCACTGTGGTGTTGGAATTGCAGTACACTGGCA | ||
| CGGATGGACCTTGCAAAGTTCCTATCTCGTCAGTGGCTTCATTGAACGACCTAACGCCAGTGGGCAGATT | ||
| GGTCACTGTCAACCCTTTTGTTTCAGTGGCCACGGCCAACGCTAAGGTCCTGATTGAATTGGAACCACCC | ||
| TTTGGAGACTCATACATAGTGGTGGGCAGAGGAGAACAACAGATCAATCACCATTGGCACAAGTCTGGAA | ||
| GCAGCATTGGCAAAGCCTTTACAACCACCCTCAAAGGAGCGCAGAGACTAGCCGCTCTAGGAGACACAGC | ||
| TTGGGACTTTGGATCAGTTGGAGGGGTGTTCACCTCAGTTGGGAAGGCTGTCCATCAAGTGTTCGGAGGA | ||
| GCATTCCGCTCACTGTTCGGAGGCATGTCCTGGATAACGCAAGGATTGCTGGGGGCTCTCCTGTTGTGGA | ||
| TGGGCATCAATGCTCGTGATAGGTCCATAGCTCTCACGTTTCTCGCAGTTGGAGGAGTTCTGCTCTTCCT | ||
| CTCCGTGAACGTGCACGCTGACACTGGGTGTGCCATAGACATCAGCCGGCAAGAGCTGAGATGTGGAAGT | ||
| GGAGTGTTCATACACAATGATGTGGAGGCTTGGATGGACCGGTACAAGTATTACCCTGAAACGCCACAAG | ||
| GCCTAGCCAAGATCATTCAGAAAGCTCATAAGGAAGGAGTGTGCGGTCTACGATCAGTTTCCAGACTGGA | ||
| GCATCAAATGTGGGAAGCAGTGAAGGACGAGCTGAACACTCTTTTGAAGGAGAATGGTGTGGACCTTAGT | ||
| GTCGTGGTTGAGAAACAGGAGGGAATGTACAAGTCAGCACCTAAACGCCTCACCGCCACCACGGAAAAAT | ||
| TGGAAATTGGCTGGAAGGCCTGGGGAAAGAGTATTTTATTTGCACCAGAACTCGCCAACAACACCTTTGT | ||
| GGTTGATGGTCCGGAGACCAAGGAATGTCCGACTCAGAATCGCGCTTGGAATAGCTTAGAAGTGGAGGAT | ||
| TTTGGATTTGGTCTCACCAGCACTCGGATGTTCCTGAAGGTCAGAGAGAGCAACACAACTGAATGTGACT | ||
| CGAAGATCATTGGAACGGCTGTCAAGAACAACTTGGCGATCCACAGTGACCTGTCCTATTGGATTGAAAG | ||
| CAGGCTCAATGATACGTGGAAGCTTGAAAGGGCAGTTCTGGGTGAAGTCAAATCATGTACGTGGCCTGAG | ||
| ACGCATACCTTGTGGGGCGATGGAATCCTTGAGAGTGACTTGATAATACCAGTCACACTGGCGGGACCAC | ||
| GAAGCAATCACAATCGGAGACCTGGGTACAAGACACAAAACCAGGGCCCATGGGACGAAGGCCGGGTAGA | ||
| GATTGACTTCGATTACTGCCCAGGAACTACGGTCACCCTGAGTGAGAGCTGCGGACACCGTGGACCTGCC | ||
| ACTCGCACCACCACAGAGAGCGGAAAGTTGATAACAGATTGGTGCTGCAGGAGCTGCACCTTACCACCAC | ||
| TGCGCTACCAAACTGACAGCGGCTGTTGGTATGGTATGGAGATCAGACCACAGAGACATGATGAAAAGAC | ||
| CCTCGTGCAGTCACAAGTGAATGCTTATAATGCTGATATGATTGACCCTTTTCAGTTGGGCCTTCTGGTC | ||
| GTGTTCTTGGCCACCCAGGAGGTCCTTCGCAAGAGGTGGACAGCCAAGATCAGCATGCCAGCTATACTGA | ||
| TTGCTCTGCTAGTCCTGGTGTTTGGGGGCATTACTTACACTGATGTGTTACGCTATGTCATCTTGGTGGG | ||
| GGCAGCTTTCGCAGAATCTAATTCGGGAGGAGACGTGGTACACTTGGCGCTCATGGCGACCTTCAAGATA | ||
| CAACCAGTGTTTATGGTGGCATCGTTTCTCAAAGCGAGATGGACCAACCAGGAGAACATTTTGTTGATGT | ||
| TGGCGGCTGTTTTCTTTCAAATGGCTTATCACGATGCCCGCCAAATTCTGCTCTGGGAGATCCCTGATGT | ||
| GTTGAATTCACTGGCGGTAGCTTGGATGATACTGAGAGCCATAACATTCACAACGACATCAAACGTGGTT | ||
| GTTCCGCTGCTAGCCCTGCTAACACCCGGGCTGAGATGCTTGAATCTGGATGTGTACAGGATACTGCTGT | ||
| TGATGGTCGGAATAGGCAGCTTGATCAGGGAGAAGAGGAGTGCAGCCGCAAAAAAGAAAGGAGCAAGTCT | ||
| GCTATGCTTGGCTCTAGCCTCAACAGGACTTTTCAACCCCATGATCCTTGCTGCTGGACTGATTGCATGT | ||
| GATCCCAACCGTAAACGCGGATGGCCCGCAACTGAAGTGATGACAGCTGTCGGCCTAATGTTTGCCATCG | ||
| TCGGAGGGCTGGCAGAGCTTGACATTGACTCCATGGCCATTCCAATGACTATCGCGGGGCTCATGTTTGC | ||
| TGCTTTCGTGATTTCTGGGAAATCAACAGATATGTGGATTGAGAGAACGGCGGACATTTCCTGGGAAAGT | ||
| GATGCAGAAATTACAGGCTCGAGCGAAAGAGTTGATGTGCGGCTTGATGATGATGGAAACTTCCAGCTCA | ||
| TGAATGATCCAGGAGCACCTTGGAAGATATGGATGCTCAGAATGGTCTGTCTCGCGATTAGTGCGTACAC | ||
| CCCCTGGGCAATCTTGCCCTCAGTAGTTGGATTTTGGATAACTCTCCAATACACAAAGAGAGGAGGCGTG | ||
| TTGTGGGACACTCCCTCACCAAAGGAGTACAAAAAGGGGGACACGACCACCGGCGTCTACAGGATCATGA | ||
| CTCGTGGGCTGCTCGGCAGTTATCAAGCAGGAGCGGGCGTGATGGTTGAAGGTGTTTTCCACACCCTTTG | ||
| GCATACAACAAAAGGAGCCGCTTTGATGAGCGGAGAGGGCCGCCTGGACCCATACTGGGGCAGTGTCAAG | ||
| GAGGATCGACTTTGTTACGGAGGACCCTGGAAATTGCAGCACAAGTGGAACGGGCAGGATGAGGTGCAGA | ||
| TGATTGTGGTGGAACCTGGCAAGAACGTTAAGAACGTCCAGACGAAACCAGGGGTGTTCAAAACACCTGA | ||
| AGGAGAAATCGGGGCCGTGACTTTGGACTTCCCCACTGGAACATCAGGCTCACCAATAGTGGACAAAAAC | ||
| GGTGATGTGATTGGGCTTTATGGCAATGGAGTCATAATGCCCAACGGCTCATACATAAGCGCGATAGTGC | ||
| AGGGTGAAAGGATGGATGAGCCAATCCCAGCCGGATTCGAACCTGAGATGCTGAGGAAAAAACAGATCAC | ||
| TGTACTGGATCTCCATCCCGGCGCCGGTAAAACAAGGAGGATTCTGCCACAGATCATCAAAGAGGCCATA | ||
| AACAGAAGACTGAGAACAGCCGTGCTAGCGCCAACCAGGGTTGTGGCTGCTGAGATGGCTGAAGCACTGA | ||
| GAGGACTGCCCATCCGGTACCAGACATCCGCAGTGCCCAGAGAACATAATGGAAATGAGATTGTTGATGT | ||
| CATGTGTCATGCTACCCTCACCCACAGGCTGATGTCTCCTCACAGGGTGCCGAACTACAACCTGTTCGTG | ||
| ATGGATGAGGCTCATTTCACCGACCCAGCTAGCATTGCAGCAAGAGGTTACATTTCCACAAAGGTCGAGC | ||
| TAGGGGAGGCGGCGGCAATATTCATGACAGCCACCCCACCAGGCACTTCAGATCCATTCCCAGAGTCCAA | ||
| TTCACCAATTTCCGACTTACAGACTGAGATCCCGGATCGAGCTTGGAACTCTGGATACGAATGGATCACA | ||
| GAATACACCGGGAAGACGGTTTGGTTTGTGCCTAGTGTCAAGATGGGGAATGAGATTGCCCTTTGCCTAC | ||
| AACGTGCTGGAAAGAAAGTAGTCCAATTGAACAGAAAGTCGTACGAGACGGAGTACCCAAAATGTAAGAA | ||
| CGATGATTGGGACTTTGTTATCACAACAGACATATCTGAAATGGGGGCTAACTTCAAGGCGAGCAGGGTG | ||
| ATTGACAGCCGGAAGAGTGTGAAACCAACCATCATAACAGAAGGAGAAGGGAGAGTGATCCTGGGAGAAC | ||
| CATCTGCAGTGACAGCAGCTAGTGCCGCCCAGAGACGTGGACGTATCGGTAGAAATCCGTCGCAAGTTGG | ||
| TGATGAGTACTGTTATGGGGGGCACACGAATGAAGACGACTCGAACTTCGCCCATTGGACTGAGGCACGA | ||
| ATCATGCTGGACAACATCAACATGCCAAACGGACTGATCGCTCAATTCTACCAACCAGAGCGTGAGAAGG | ||
| TATATACCATGGATGGGGAATACCGGCTCAGAGGAGAAGAGAGAAAAAACTTTCTGGAACTGTTGAGGAC | ||
| TGCAGATCTGCCAGTTTGGCTGGCTTACAAGGTTGCAGCGGCTGGAGTGTCATACCACGACCGGAGGTGG | ||
| TGCTTTGATGGTCCTAGGACAAACACAATTTTAGAAGACAACAACGAAGTGGAAGTCATCACGAAGCTTG | ||
| GTGAAAGGAAGATTCTGAGGCCGCGCTGGATTGATGCCAGGGTGTACTCGGATCACCAGGCACTAAAGGC | ||
| GTTCAAGGACTTCGCCTCGGGAAAACGTTCTCAGATAGGGCTCATTGAGGTTCTGGGAAAGATGCCTGAG | ||
| CACTTCATGGGGAAGACATGGGAAGCACTTGACACCATGTACGTTGTGGCCACTGCAGAGAAAGGAGGAA | ||
| GAGCTCACAGAATGGCCCTGGAGGAACTGCCAGATGCTCTTCAGACAATTGCCTTGATTGCCTTATTGAG | ||
| TGTGATGACCATGGGAGTATTCTTCCTCCTCATGCAGCGGAAGGGCATTGGAAAGATAGGTTTGGGAGGC | ||
| GCTGTCTTGGGAGTCGCGACCTTTTTCTGTTGGATGGCTGAAGTTCCAGGAACGAAGATCGCCGGAATGT | ||
| TGCTGCTCTCCCTTCTCTTGATGATTGTGCTAATTCCTGAGCCAGAGAAGCAACGTTCGCAGACAGACAA | ||
| CCAGCTAGCCGTGTTCCTGATTTGTGTCATGACCCTTGTGAGCGCAGTGGCAGCCAACGAGATGGGTTGG | ||
| CTAGATAAGACCAAGAGTGACATAAGCAGTTTGTTTGGGCAAAGAATTGAGGTCAAGGAGAATTTCAGCA | ||
| TGGGAGAGTTTCTTCTGGACTTGAGGCCGGCAACAGCCTGGTCACTGTACGCTGTGACAACAGCGGTCCT | ||
| CACTCCACTGCTAAAGCATTTGATCACGTCAGATTACATCAACACCTCATTGACCTCAATAAACGTTCAG | ||
| GCAAGTGCACTATTCACACTCGCGCGAGGCTTCCCCTTCGTCGATGTTGGAGTGTCGGCTCTCCTGCTAG | ||
| CAGCCGGATGCTGGGGACAAGTCACCCTCACCGTTACGGTAACAGCGGCAACACTCCTTTTTTGCCACTA | ||
| TGCCTACATGGTTCCCGGTTGGCAAGCTGAGGCAATGCGCTCAGCCCAGCGGCGGACAGCGGCCGGAATC | ||
| ATGAAGAACGCTGTAGTGGATGGCATCGTGGCCACGGACGTCCCAGAATTAGAGCGCACCACACCCATCA | ||
| TGCAGAAGAAAGTTGGACAGATCATGCTGATCTTGGTGTCTCTAGCTGCAGTAGTAGTGAACCCGTCTGT | ||
| GAAGACAGTACGAGAAGCCGGAATTTTGATCACGGCCGCAGCGGTGACGCTTTGGGAGAATGGAGCAAGC | ||
| TCTGTTTGGAACGCAACAACTGCCATCGGACTCTGCCACATCATGCGTGGGGGTTGGTTGTCATGTCTAT | ||
| CCATAACATGGACACTCATAAAGAACATGGAAAAACCAGGACTAAAAAGAGGTGGGGCAAAAGGACGCAC | ||
| CTTGGGAGAGGTTTGGAAAGAAAGACTCAACCAGATGACAAAAGAAGAGTTCACTAGGTACCGCAAAGAG | ||
| GCCATCATCGAAGTCGATCGCTCAGCGGCAAAACACGCCAGGAAAGAAGGCAATGTCACTGGAGGGCATC | ||
| CAGTCTCTAGGGGCACAGCAAAACTGAGATGGCTGGTCGAACGGAGGTTTCTCGAACCGGTCGGAAAAGT | ||
| GATTGACCTTGGATGTGGAAGAGGCGGTTGGTGTTACTATATGGCAACCCAAAAAAGAGTCCAAGAAGTC | ||
| AGAGGGTACACAAAGGGCGGTCCCGGACATGAAGAGCCCCAACTAGTGCAAAGTTATGGATGGAACATTG | ||
| TCACCATGAAGAGTGGAGTGGATGTGTTCTACAGACCTTCTGAGTGTTGTGACACCCTCCTTTGTGACAT | ||
| CGGAGAGTCCTCGTCAAGTGCTGAGGTTGAAGAGCATAGGACGATTCGGGTCCTTGAAATGGTTGAGGAC | ||
| TGGCTGCACCGAGGGCCAAGGGAATTTTGCGTGAAGGTGCTCTGTCCCTACATGCCGAAAGTCATAGAGA | ||
| AGATGGAGCTGCTCCAACGCCGGTATGGGGGGGGACTGGTCAGAAACCCACTCTCACGGAATTCCACGCA | ||
| CGAGATGTATTGGGTGAGTCGAGCTTCAGGCAATGTGGTACATTCAGTGAATATGACCAGCCAGGTGCTC | ||
| CTAGGAAGAATGGAAAAAAGGACCTGGAAGGGACCCCAATACGAGGAAGATGTAAACTTGGGAAGTGGAA | ||
| CCAGGGCGGTGGGAAAACCCCTGCTCAACTCAGACACCAGTAAAATCAAGAACAGGATTGAACGACTCAG | ||
| GCGTGAGTACAGTTCGACGTGGCACCACGATGAGAACCACCCATATAGAACCTGGAACTATCACGGCAGT | ||
| TATGATGTGAAGCCCACAGGCTCCGCCAGTTCGCTGGTCAATGGAGTGGTCAGGCTCCTCTCAAAACCAT | ||
| GGGACACCATCACGAATGTTACCACCATGGCCATGACTGACACTACTCCCTTCGGGCAGCAGCGAGTGTT | ||
| CAAAGAGAAGGTGGACACGAAAGCTCCTGAACCGCCAGAAGGAGTGAAGTACGTGCTCAACGAGACCACC | ||
| AACTGGTTGTGGGCGTTTTTGGCCAGAGAAAAACGTCCCAGAATGTGCTCTCGAGAGGAATTCATAAGAA | ||
| AGGTCAACAGCAATGCAGCTTTGGGTGCCATGTTTGAAGAGCAGAATCAATGGAGGAGCGCCAGAGAAGC | ||
| AGTTGAAGATCCAAAATTTTGGGAGATGGTGGATGAGGAGCGCGAGGCACATCTGCGGGGGGAATGTCAC | ||
| ACTTGCATTTACAACATGATGGGAAAGAGAGAGAAAAAACCCGGAGAGTTCGGAAAGGCCAAGGGAAGCA | ||
| GAGCCATTTGGTTCATGTGGCTCGGAGCTCGCTTTCTGGAGTTCGAGGCTCTGGGTTTTCTCAATGAAGA | ||
| CCACTGGCTTGGAAGAAAGAACTCAGGAGGAGGTGTCGAGGGCTTGGGCCTCCAAAAACTGGGTTACATC | ||
| CTGCGTGAAGTTGGCACCCGGCCTGGGGGCAAGATCTATGCTGATGACACAGCTGGCTGGGACACCCGCA | ||
| TCACGAGAGCTGACTTGGAAAATGAAGCTAAGGTGCTTGAGCTGCTTGATGGGGAACATCGGCGTCTTGC | ||
| CAGGGCCATCATTGAGCTCACCTATCGTCACAAAGTTGTGAAAGTGATGCGCCCGGCTGCTGATGGAAGA | ||
| ACCGTCATGGATGTTATCTCCAGAGAAGATCAGAGGGGGAGTGGACAAGTTGTCACCTACGCCCTAAACA | ||
| CTTTCACCAACCTGGCCGTCCAGCTGGTGAGGATGATGGAAGGGGAAGGAGTGATTGGCCCAGATGATGT | ||
| GGAGAAACTCACAAAAGGGAAAGGACCCAAAGTCAGGACCTGGCTGTTTGAGAATGGGGAAGAAAGACTC | ||
| AGCCGCATGGCTGTCAGTGGAGATGACTGTGTGGTAAAGCCCCTGGACGATCGCTTTGCCACCTCGCTCC | ||
| ACTTCCTCAATGCTATGTCAAAGGTTCGCAAAGACATCCAAGAGTGGAAACCGTCAACTGGATGGTATGA | ||
| TTGGCAGCAGGTTCCATTTTGCTCAAACCATTTCACTGAATTGATCATGAAAGATGGAAGAACACTGGTG | ||
| GTTCCATGCCGAGGACAGGATGAATTGGTAGGCAGAGCTCGCATATCTCCAGGGGCCGGATGGAACGTCC | ||
| GCGACACTGCTTGTCTGGCTAAGTCTTATGCCCAGATGTGGCTGCTTCTGTACTTCCACAGAAGAGACCT | ||
| GCGGCTCATGGCCAACGCCATTTGCTCCGCTGTCCCTGTGAATTGGGTCCCTACCGGAAGAACCACGTGG | ||
| TCCATCCATGCAGGAGGAGAGTGGATGACAACAGAGGACATGTTGGAGGTCTGGAACCGTGTTTGGATAG | ||
| AGGAGAATGAATGGATGGAAGACAAAACCCCAGTGGAGAAATGGAGTGACGTCCCATATTCAGGAAAACG | ||
| AGAGGACATCTGGTGTGGCAGCCTGATTGGCACAAGAGCCCGAGCCACGTGGGCAGAAAACATCCAGGTG | ||
| GCTATCAACCAAGTCAGAGCAATCATCGGAGATGAGAAGTATGTGGACTACATGAGTTCACTAAAGAGAT | ||
| ATGAAGACACAACTTTGGTTGAGGACACAGTACTGTAGATATTTAATCAATTGTAAATAGACAATATAAG | ||
| TATGCATAAAAGTGTAGTTTTATAGTAGTATTTAGTGGTGTTAGTGTAAATAGTTAAGAAAATTTTGAGG | ||
| AGAAAGTCAGGCCGGGAAGTTCCCGCCACCGGAAGTTGAGTAGACGGTGCTGCCTGCGACTCAACCCCAG | ||
| GAGGACTGGGTGAACAAAGCCGCGAAGTGATCCATGTAAGCCCTCAGAACCGTCTCGGAAGGAGGACCCC | ||
| ACATGTTGTAACTTCAAAGCCCAATGTCAGACCACGCTACGGCGTGCTACTCTGCGGAGAGTGCAGTCTG | ||
| CGATAGTGCCCCAGGAGGACTGGGTTAACAAAGGCAAACCAACGCCCCACGCGGCCCTAGCCCCGGTAAT | ||
| GGTGTTAACCAGGGCGAAAGGACTAGAGGTTAGAGGAGACCCCGCGGTTTAAAGTGCACGGCCCAGCCTG | ||
| GCTGAAGCTGTAGGTCAGGGGAAGGACTAGAGGTTAGTGGAGACCCCGTGCCACAAAACACCACAACAAA | ||
| ACAGCATATTGACACCTGGGATAGACTAGGAGATCTTCTGCTCTGCACAACCAGCCACACGGCACAGTGC | ||
| GCCGACAATGGTGGCTGGTGGTGCGAGAACACAGGATCT |
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| ## Unreleased | ||
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| Initial release of this dataset. |
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| # Nextclade dataset for "Zaire Ebolavirus" | ||
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| | Key | Value | | ||
| | ---------------------- | ------------------------------------------------------------------------------- | | ||
| | authors | [Cornelius Roemer](https://neherlab.org), [Richard Neher](https://neherlab.org) | | ||
| | data source | Genbank | | ||
| | nextclade dataset path | nextstrain/ebola/zaire | | ||
| | annotation | [NC_002549.1](https://www.ncbi.nlm.nih.gov/nuccore/NC_002549) | | ||
| | related datasets | Sudan Ebolavirus: `nextstrain/ebola/zaire` | |
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