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Various docs improvements#724

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ivan-aksamentov merged 7 commits intomasternextstrain/nextclade:masterfrom docs/improvementnextstrain/nextclade:docs/improvementCopy head branch name to clipboardFeb 15, 2022

+87-44

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Commits on Feb 8, 2022

• docs: add links to qc.json from quality control page

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• docs: improve private muts section in algo, add figures

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• docs: resolve comments/todos in qc section

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• docs: add input-virus-properties URL parameter

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• docs: document advanced web mode

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• docs: add 0/1-indexing hints to input-files.md

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Commits on Feb 10, 2022

• docs: point out 0 vs 1-indexing in JSON output, resolves #259

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