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Soft-mask (just for topology) 486P site 23018 #1060

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Soft-mask (just for topology) 486P site 23018 #1060

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2 changes: 1 addition & 1 deletion defaults/parameters.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -68,7 +68,7 @@ files:
clades: "defaults/clades.tsv"
emerging_lineages: "defaults/emerging_lineages.tsv"
mutational_fitness_distance_map: "defaults/mutational_fitness_distance_map.json"
sites_to_mask: "defaults/sites_ignored_for_tree_topology.txt"
sites_to_mask: "defaults/sites_ignored_for_tree_topology.txt" # these are the soft-masked sites, just for topology
rbd_level_definitions: "defaults/rbd_levels.yaml"

# Define genes to translate during alignment by nextalign.
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1 change: 1 addition & 0 deletions defaults/sites_ignored_for_tree_topology.txt
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Expand Up @@ -2,6 +2,7 @@
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