Use accession for node name but display strain #275
+18
−62
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This is a companion commit to changes in Auspice nextstrain/auspice#1668 which allow any node-attr to be used as the tip label and which displays this tip label in the node hover/click boxes as well as alongside nodes (at suitable zoom levels). This allows us to drop the
set_final_strain_name
script and ensures all node names are unique which improves the behaviour of AuspiceThis commit only changes the Nextstrain datasets, not the Nextclade ones
When viewed on a version of Auspice without the companion changes an error is printed to the console "Invalid JSON-defined tip label: strain" and we fall back to using the
node.name
(accession) as the tip label.Testing datasets available at: