fix: pin pulp<2.8, required by snakemake #53
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Pulp 2.8.0 breaks snakemake. We need to pin until we upgrade snakemake to a version that is compatible with recent versions of pulp again. See snakemake/snakemake#2607 We might need to make a similar change to docker-base
victorlin
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Jan 12, 2024
corneliusroemer
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See parallel conda-base PR for details nextstrain/conda-base#53 Further discussion: https://bedfordlab.slack.com/archives/C01LCTT7JNN/p1705086544738269
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This reverts commit 75b5dc6. To check if test-pathogen-repo-ci fails.
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Without this fix, CI errors during Nextstrain CLI setup in each test-pathogen-repo-ci job: |
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Pulp 2.8.0 breaks snakemake.
We need to pin until we upgrade snakemake to a version that is compatible with recent versions of pulp again. See snakemake/snakemake#2607 We might need to make a similar change to docker-base