Merge pull request #458 from nextflow-io/executable-fixes

Executable-fixes
nextflow-io · Nov 18, 2024 · fa92ba5 · fa92ba5
2 parents 3739f0a + 19c739f
commit fa92ba5
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diff --git a/hello-nextflow/hello-genomics.nf b/hello-nextflow/hello-genomics.nf
diff --git a/hello-nextflow/hello-world.nf b/hello-nextflow/hello-world.nf
diff --git a/hello-nextflow/solutions/hello-world/hello-world-1.nf b/hello-nextflow/solutions/hello-world/hello-world-1.nf
diff --git a/hello-nextflow/solutions/hello-world/hello-world-2.nf b/hello-nextflow/solutions/hello-world/hello-world-2.nf
diff --git a/hello-nextflow/solutions/hello-world/hello-world-3.nf b/hello-nextflow/solutions/hello-world/hello-world-3.nf
diff --git a/hello-nextflow/solutions/hello-world/hello-world-4.nf b/hello-nextflow/solutions/hello-world/hello-world-4.nf
diff --git a/hello-nextflow/solutions/hello-world/hello-world-5.nf b/hello-nextflow/solutions/hello-world/hello-world-5.nf
diff --git a/hello-nextflow/solutions/hello-world/hello-world-6.nf b/hello-nextflow/solutions/hello-world/hello-world-6.nf
diff --git a/hello-nextflow/solutions/hello-world/hello-world-7.nf b/hello-nextflow/solutions/hello-world/hello-world-7.nf
diff --git a/hello-nextflow/solutions/hello-world/hello-world-8.nf b/hello-nextflow/solutions/hello-world/hello-world-8.nf
diff --git a/hello-nextflow/solutions/hello-world/hello-world-9.nf b/hello-nextflow/solutions/hello-world/hello-world-9.nf
diff --git a/nf-customize/data/gut_1.fastq.gz b/nf-customize/data/gut_1.fastq.gz
diff --git a/nf-customize/data/gut_2.fastq.gz b/nf-customize/data/gut_2.fastq.gz
diff --git a/nf-customize/data/liver_1.fastq.gz b/nf-customize/data/liver_1.fastq.gz
diff --git a/nf-customize/data/liver_2.fastq.gz b/nf-customize/data/liver_2.fastq.gz
diff --git a/nf-customize/data/lung_1.fastq.gz b/nf-customize/data/lung_1.fastq.gz
diff --git a/nf-customize/data/lung_2.fastq.gz b/nf-customize/data/lung_2.fastq.gz
diff --git a/nf-training-advanced/groovy/main.nf b/nf-training-advanced/groovy/main.nf
diff --git a/nf-training-advanced/metadata/main.nf b/nf-training-advanced/metadata/main.nf
diff --git a/nf-training-advanced/operators/main.nf b/nf-training-advanced/operators/main.nf
diff --git a/nf-training-advanced/structure/main.nf b/nf-training-advanced/structure/main.nf
diff --git a/nf-training/data/ggal/gut_1.fq b/nf-training/data/ggal/gut_1.fq
diff --git a/nf-training/data/ggal/gut_2.fq b/nf-training/data/ggal/gut_2.fq
diff --git a/nf-training/data/ggal/liver_1.fq b/nf-training/data/ggal/liver_1.fq
diff --git a/nf-training/data/ggal/liver_2.fq b/nf-training/data/ggal/liver_2.fq
diff --git a/nf-training/data/ggal/lung_1.fq b/nf-training/data/ggal/lung_1.fq
diff --git a/nf-training/data/ggal/lung_2.fq b/nf-training/data/ggal/lung_2.fq
diff --git a/nf-training/data/ggal/transcriptome.fa b/nf-training/data/ggal/transcriptome.fa
diff --git a/nf-training/data/reads/110101_I315_FC816RLABXX_L1_HUMrutRGXDIAAPE_1.fq.gz b/nf-training/data/reads/110101_I315_FC816RLABXX_L1_HUMrutRGXDIAAPE_1.fq.gz
diff --git a/nf-training/data/reads/110101_I315_FC816RLABXX_L1_HUMrutRGXDIAAPE_2.fq.gz b/nf-training/data/reads/110101_I315_FC816RLABXX_L1_HUMrutRGXDIAAPE_2.fq.gz
diff --git a/nf-training/data/reads/110105_I186_FC812MWABXX_L8_HUMrutRGVDIABPE_1.fq.gz b/nf-training/data/reads/110105_I186_FC812MWABXX_L8_HUMrutRGVDIABPE_1.fq.gz
diff --git a/nf-training/data/reads/110105_I186_FC812MWABXX_L8_HUMrutRGVDIABPE_2.fq.gz b/nf-training/data/reads/110105_I186_FC812MWABXX_L8_HUMrutRGVDIABPE_2.fq.gz
diff --git a/nf-training/data/reads/110121_I288_FC81DE8ABXX_L3_HUMrutRGXDIAAPE_1.fq.gz b/nf-training/data/reads/110121_I288_FC81DE8ABXX_L3_HUMrutRGXDIAAPE_1.fq.gz
diff --git a/nf-training/data/reads/110121_I288_FC81DE8ABXX_L3_HUMrutRGXDIAAPE_2.fq.gz b/nf-training/data/reads/110121_I288_FC81DE8ABXX_L3_HUMrutRGXDIAAPE_2.fq.gz
diff --git a/nf-training/data/reads/110122_I329_FC81DB5ABXX_L6_HUMrutRGVDIAAPE_1.fq.gz b/nf-training/data/reads/110122_I329_FC81DB5ABXX_L6_HUMrutRGVDIAAPE_1.fq.gz
diff --git a/nf-training/data/reads/110122_I329_FC81DB5ABXX_L6_HUMrutRGVDIAAPE_2.fq.gz b/nf-training/data/reads/110122_I329_FC81DB5ABXX_L6_HUMrutRGVDIAAPE_2.fq.gz
diff --git a/nf-training/data/reads/110128_I481_FC819P0ABXX_L5_HUMrutRGWDIAAPE_1.fq.gz b/nf-training/data/reads/110128_I481_FC819P0ABXX_L5_HUMrutRGWDIAAPE_1.fq.gz
diff --git a/nf-training/data/reads/110128_I481_FC819P0ABXX_L5_HUMrutRGWDIAAPE_2.fq.gz b/nf-training/data/reads/110128_I481_FC819P0ABXX_L5_HUMrutRGWDIAAPE_2.fq.gz
diff --git a/nf-training/data/reads/sample.fq.gz b/nf-training/data/reads/sample.fq.gz
diff --git a/nf-training/nextflow.config b/nf-training/nextflow.config
diff --git a/nf-training/script1.nf b/nf-training/script1.nf
diff --git a/nf-training/script2.nf b/nf-training/script2.nf
diff --git a/nf-training/script3.nf b/nf-training/script3.nf
diff --git a/nf-training/script4.nf b/nf-training/script4.nf
diff --git a/nf-training/script5.nf b/nf-training/script5.nf
diff --git a/nf-training/script6.nf b/nf-training/script6.nf
diff --git a/nf-training/script7.nf b/nf-training/script7.nf
diff --git a/nf-training/snippet.nf b/nf-training/snippet.nf
diff --git a/troubleshoot/exercise1/hello-gatk.nf b/troubleshoot/exercise1/hello-gatk.nf
diff --git a/troubleshoot/exercise2/hello-gatk.nf b/troubleshoot/exercise2/hello-gatk.nf
diff --git a/troubleshoot/exercise3/hello-gatk.nf b/troubleshoot/exercise3/hello-gatk.nf
diff --git a/troubleshoot/exercise4/hello-gatk.nf b/troubleshoot/exercise4/hello-gatk.nf
diff --git a/troubleshoot/exercise5/hello-gatk.nf b/troubleshoot/exercise5/hello-gatk.nf
diff --git a/troubleshoot/exercise6/hello-gatk.nf b/troubleshoot/exercise6/hello-gatk.nf
diff --git a/troubleshoot/hello-gatk.nf b/troubleshoot/hello-gatk.nf