Merge pull request #480 from nextflow-io/pinin4fjords-patch-1

Better handle assets dir in nf-core section
nextflow-io · Nov 22, 2024 · e656f03 · e656f03
2 parents b6b5d35 + 7a0bef3
commit e656f03
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diff --git a/.gitpod.yml b/.gitpod.yml
@@ -29,6 +29,8 @@ tasks:
       command: docker pull -q nextflow/rnaseq-nf
 
     - name: Start Nextflow Tutorial
+      env:
+          NXF_HOME: "/workspace/gitpod/.nextflow"
       command: |
           cd hello-nextflow
           source $HOME/.bashrc

diff --git a/docs/hello_nextflow/09_hello_nf-core.md b/docs/hello_nextflow/09_hello_nf-core.md
@@ -63,10 +63,10 @@ However nf-core is the largest open curated collection of Nextflow pipelines.
 
 !!!tip
 
-    One detail that sometimes trips people up is that the pipelines you pull this way are stored in a hidden assets folder:
+    Pulled pipelines are stored in a hidden assets folder. By default, this folder is `$HOME/.nextflow/assets`, but in this training environment the folder has been set to `$NXF_HOME/assets`:
 
     ```bash
-    tree $HOME/.nextflow/assets/ -L 2
+    tree $NXF_HOME/assets/ -L 2
     ```
 
     ```console title="Output"