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more formatting
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FriederikeHanssen committed Nov 19, 2024
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8 changes: 4 additions & 4 deletions docs/hello_nextflow/09_hello_nf-core.md
Original file line number Diff line number Diff line change
Expand Up @@ -1045,7 +1045,7 @@ Lastly, `sample` is information about the files that we want to attach and pass

This sets the key name as `id` and the value that is in the `sample` column, for example `SAMPLE1_PE`:

```console title=meta
```console title="meta"
[id: SAMPLE1_PE]
```

Expand Down Expand Up @@ -1092,7 +1092,7 @@ nextflow run . -profile docker,test --outdir results

The meta map now has a new key `sequencer`, that is empty because we did not specify a value yet:

```console title="Output"
```console title="output"
[['id':'SAMPLE1_PE', 'sequencer':[], 'single_end':false], ... ]
[['id':'SAMPLE2_PE', 'sequencer':[], 'single_end':false], ... ]
[['id':'SAMPLE3_SE', 'sequencer':[], 'single_end':true], ... ]
Expand All @@ -1104,9 +1104,9 @@ We have also prepared a new samplesheet, that has the `sequencer` column. You ca
nextflow run . -profile docker,test --outdir results --input ../data/sequencer_samplesheet.csv
```

This populates the `sequencer` and we could access it in the pipeline:
This populates the `sequencer` and we can see it in the pipeline, when `view`ing the samplesheet channel:

```console
```console title="output"
[['id':'SAMPLE1_PE', 'sequencer':'sequencer1', 'single_end':false], ... ]
[['id':'SAMPLE2_PE', 'sequencer':'sequencer2', 'single_end':false], ... ]
[['id':'SAMPLE3_SE', 'sequencer':'sequencer3', 'single_end':true], ... ]
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