Add support for Python 3.13

neuronsimulator · Dec 4, 2024 · bb74a5f · bb74a5f
1 parent d24a901
commit bb74a5f
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Showing 9 changed files with 21 additions and 5 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -53,6 +53,7 @@ jobs:
               310) pyenv_py_ver="3.10" ;;
               311) pyenv_py_ver="3.11" ;;
               312) pyenv_py_ver="3.12" ;;
+              313) pyenv_py_ver="3.13" ;;
               *) echo "Error: pyenv python version not specified or not supported." && exit 1;;
             esac
 
@@ -86,7 +87,7 @@ workflows:
                 - /circleci\/.*/
           matrix:
             parameters:
-              NRN_PYTHON_VERSION: ["312"]
+              NRN_PYTHON_VERSION: ["313"]
               NRN_NIGHTLY_UPLOAD: ["false"]
 
   nightly:
@@ -101,5 +102,5 @@ workflows:
       - manylinux2014-aarch64:
           matrix:
             parameters:
-              NRN_PYTHON_VERSION: ["39", "310", "311", "312"]
+              NRN_PYTHON_VERSION: ["39", "310", "311", "312", "313"]
               NRN_NIGHTLY_UPLOAD: ["true"]
diff --git a/.github/workflows/coverage.yml b/.github/workflows/coverage.yml
@@ -24,7 +24,7 @@ on:
 env:
   PY_MIN_VERSION: '3.9'
   PY_MID_VERSION: '3.10'
-  PY_MAX_VERSION: '3.12'
+  PY_MAX_VERSION: '3.13'
 
 jobs:
   coverage:

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
@@ -17,7 +17,7 @@ on:
       - release/**
 
 env:
-  DEFAULT_PY_VERSION: '3.12'
+  DEFAULT_PY_VERSION: '3.13'
 
 jobs:
   documentation:

diff --git a/.github/workflows/neuron-ci.yml b/.github/workflows/neuron-ci.yml
@@ -39,7 +39,7 @@ jobs:
       DESIRED_CMAKE_VERSION: 3.17
       DYNAMIC_PYTHON_CMAKE_VERSION: 3.18
       PY_MIN_VERSION: ${{ matrix.config.python_min_version || '3.9' }}
-      PY_MAX_VERSION: ${{ matrix.config.python_max_version || '3.12' }}
+      PY_MAX_VERSION: ${{ matrix.config.python_max_version || '3.13' }}
       MUSIC_INSTALL_DIR: /opt/MUSIC
       # hash of commit containing mpi4py 4 fix
       MUSIC_VERSION: '13f312338dcccebfe74d391b1b24f1b6d816ac6c'

diff --git a/azure-pipelines.yml b/azure-pipelines.yml
@@ -42,6 +42,9 @@ stages:
             python.version: '3.11'
           Python312:
             python.version: '3.12'
+          Python313:
+            python.version: '3.13'
+
       steps:
 
       # Secure files documentation:
@@ -102,6 +105,10 @@ stages:
             python.version: '3.12'
             python.org.version: '3.12.0'
             python.installer.name: 'macos11.pkg'
+          Python313:
+            python.version: '3.13'
+            python.org.version: '3.13.0'
+            python.installer.name: 'macos11.pkg'
 
       steps:
 

diff --git a/ci/win_download_deps.cmd b/ci/win_download_deps.cmd
@@ -7,6 +7,7 @@ pwsh -command Invoke-WebRequest -MaximumRetryCount 4 -OutFile python-3.9.exe htt
 pwsh -command Invoke-WebRequest -MaximumRetryCount 4 -OutFile python-3.10.exe https://www.python.org/ftp/python/3.10.0/python-3.10.0-amd64.exe || goto :error
 pwsh -command Invoke-WebRequest -MaximumRetryCount 4 -OutFile python-3.11.exe https://www.python.org/ftp/python/3.11.1/python-3.11.1-amd64.exe || goto :error
 pwsh -command Invoke-WebRequest -MaximumRetryCount 4 -OutFile python-3.12.exe https://www.python.org/ftp/python/3.12.1/python-3.12.1-amd64.exe || goto :error
+pwsh -command Invoke-WebRequest -MaximumRetryCount 4 -OutFile python-3.13.exe https://www.python.org/ftp/python/3.13.0/python-3.13.0-amd64.exe || goto :error
 
 :: mpi
 pwsh -command Invoke-WebRequest -MaximumRetryCount 4 -OutFile msmpisetup.exe https://download.microsoft.com/download/a/5/2/a5207ca5-1203-491a-8fb8-906fd68ae623/msmpisetup.exe || goto :error

diff --git a/ci/win_install_deps.cmd b/ci/win_install_deps.cmd
@@ -7,6 +7,7 @@ python-3.9.exe /passive Include_pip=1 Include_test=0 PrependPath=1 DefaultJustFo
 python-3.10.exe /passive Include_pip=1 Include_test=0 PrependPath=1 DefaultJustForMeTargetDir=C:\Python310 || goto :error
 python-3.11.exe /passive Include_pip=1 Include_test=0 PrependPath=1 DefaultJustForMeTargetDir=C:\Python311 || goto :error
 python-3.12.exe /passive Include_pip=1 Include_test=0 PrependPath=1 DefaultJustForMeTargetDir=C:\Python312 || goto :error
+python-3.13.exe /passive Include_pip=1 Include_test=0 PrependPath=1 DefaultJustForMeTargetDir=C:\Python313 || goto :error
 
 :: fix msvcc version for all python3
 pwsh -command "(Get-Content C:\Python39\Lib\distutils\cygwinccompiler.py) -replace 'elif msc_ver == ''1600'':', 'elif msc_ver == ''1927'':' | Out-File C:\Python39\Lib\distutils\cygwinccompiler.py"
@@ -24,8 +25,10 @@ C:\Python39\python.exe -m pip install  numpy cython || goto :error
 C:\Python310\python.exe -m pip install numpy cython || goto :error
 C:\Python311\python.exe -m pip install numpy cython || goto :error
 C:\Python312\python.exe -m pip install numpy cython || goto :error
+C:\Python313\python.exe -m pip install numpy cython || goto :error
 :: setuptools 70.2 leads to an error
 C:\Python312\python.exe -m pip install setuptools==70.1.1 || goto :error
+C:\Python313\python.exe -m pip install setuptools==70.1.1 || goto :error
 
 :: install nsis
 nsis-3.05-setup.exe /S || goto :error

diff --git a/ci/win_test_installer.cmd b/ci/win_test_installer.cmd
@@ -21,18 +21,21 @@ C:\Python39\python -c "import neuron; neuron.test(); quit()" || set "errorfound=
 C:\Python310\python -c "import neuron; neuron.test(); quit()" || set "errorfound=y"
 C:\Python311\python -c "import neuron; neuron.test(); quit()" || set "errorfound=y"
 C:\Python312\python -c "import neuron; neuron.test(); quit()" || set "errorfound=y"
+C:\Python313\python -c "import neuron; neuron.test(); quit()" || set "errorfound=y"
 
 :: install oldest supported numpy
 C:\Python39\python.exe -m pip install -r packaging/python/oldest_numpy_requirements.txt || goto :error
 C:\Python310\python.exe -m pip install -r packaging/python/oldest_numpy_requirements.txt || goto :error
 C:\Python311\python.exe -m pip install -r packaging/python/oldest_numpy_requirements.txt || goto :error
 C:\Python312\python.exe -m pip install -r packaging/python/oldest_numpy_requirements.txt || goto :error
+C:\Python313\python.exe -m pip install -r packaging/python/oldest_numpy_requirements.txt || goto :error
 
 :: test all pythons again
 C:\Python39\python -c "import neuron; neuron.test(); quit()" || set "errorfound=y"
 C:\Python310\python -c "import neuron; neuron.test(); quit()" || set "errorfound=y"
 C:\Python311\python -c "import neuron; neuron.test(); quit()" || set "errorfound=y"
 C:\Python312\python -c "import neuron; neuron.test(); quit()" || set "errorfound=y"
+C:\Python313\python -c "import neuron; neuron.test(); quit()" || set "errorfound=y"
 
 :: run also using whatever is system python
 python -m pip install numpy

diff --git a/packaging/python/oldest_numpy_requirements.txt b/packaging/python/oldest_numpy_requirements.txt
@@ -3,3 +3,4 @@ numpy==1.21.6;python_version=='3.9' and platform_machine=='arm64'
 numpy==1.21.6;python_version=='3.10'
 numpy==1.23.5;python_version=='3.11'
 numpy==1.26.4;python_version=='3.12'
+numpy==2.1.0;python_version=='3.13'