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Bring NMODL transpiler under NEURON project #9515

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Bring NMODL transpiler under NEURON project

Bring NMODL transpiler under NEURON project #9515

Triggered via pull request December 2, 2024 23:35
@pramodkpramodk
opened #3265
pramodk/nmodl-merge
Status Success
Total duration 1h 12m 5s
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neuron-ci.yml

on: pull_request
Matrix: ci
Final CI
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63 warnings
ubuntu-20.04 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
The process '/usr/bin/git' failed with exit code 128
ubuntu-20.04 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
The process '/usr/bin/git' failed with exit code 128
ubuntu-20.04 - setuptools (CC=gcc-9 CXX=g++-9)
The process '/usr/bin/git' failed with exit code 128
ubuntu-20.04 - setuptools (CC=gcc-9 CXX=g++-9)
Cache save failed.
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=addressaddress)
The process '/usr/bin/git' failed with exit code 128
ubuntu-20.04 - cmake (CC=gcc-10 CXX=g++-10)
The process '/usr/bin/git' failed with exit code 128
ubuntu-20.04 - cmake (CC=gcc-10 CXX=g++-10)
The process '/usr/bin/git' failed with exit code 128
ubuntu-20.04 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
The process '/usr/bin/git' failed with exit code 128
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined)
The process '/usr/bin/git' failed with exit code 128
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined): src/nrnpython/nrnpython.cpp#L198
'Py_NoSiteFlag' is deprecated [-Wdeprecated-declarations]
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined): src/nrnpython/rxd.cpp#L480
'const' qualifier on function type 'fptr' (aka 'void ()') has no effect [-Wignored-qualifiers]
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined): src/nrnpython/rxd.cpp#L484
'const' qualifier on function type 'fptr' (aka 'void ()') has no effect [-Wignored-qualifiers]
ubuntu-24.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_MPI=OFF -DCORENRN_ENABLE_OPENMP=OFF -DNRN_ENABLE_RX3D=OFFthread)
The process '/usr/bin/git' failed with exit code 128
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
The process '/usr/local/bin/git' failed with exit code 128
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
macOS's Gatekeeper has been disabled for this Cask
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
The process '/usr/local/bin/git' failed with exit code 128
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
macOS's Gatekeeper has been disabled for this Cask
macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
macOS's Gatekeeper has been disabled for this Cask
macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
Treating cmake as a formula. For the cask, use homebrew/cask/cmake or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
cmake 3.31.1 is already installed and up-to-date. To reinstall 3.31.1, run: brew reinstall cmake
macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
The process '/opt/homebrew/bin/git' failed with exit code 128
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
The process '/usr/local/bin/git' failed with exit code 128
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
macOS's Gatekeeper has been disabled for this Cask
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
macOS's Gatekeeper has been disabled for this Cask
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
The process '/usr/local/bin/git' failed with exit code 128
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
Cache save failed.
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
The process '/usr/local/bin/git' failed with exit code 128
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
macOS's Gatekeeper has been disabled for this Cask
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
macOS's Gatekeeper has been disabled for this Cask
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
The process '/usr/local/bin/git' failed with exit code 128
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
macOS's Gatekeeper has been disabled for this Cask
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
The process '/usr/local/bin/git' failed with exit code 128
Final CI
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636