Code

Tathey1 ailey#445

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Merged

tathey1 merged 178 commits intodevelopneurodata/brainlit:developfrom tathey1-aileyneurodata/brainlit:tathey1-aileyCopy head branch name to clipboardJan 4, 2024

+3,984-1,164

Commits

Commits on May 11, 2023

• Merge branch 'tathey1-ailey' into tathey1-docker-run

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• almost ready

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• ready ms25

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• Merge branch 'tathey1-ailey' into tathey1-docker-run

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• about to test locally

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• docker minus credentials

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• all cpus

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Commits on May 15, 2023

• ready for analysis computer proc

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• remove import

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• merge deocker

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• nb updates

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• change sizes

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Commits on May 16, 2023

• re-interval

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• keep ocntext open more

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• break

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• hemi regressions

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Commits on May 19, 2023

• merge

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Commits on May 20, 2023

• MS36 validated

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Commits on May 22, 2023

• ms36 update

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Commits on May 25, 2023

• updates

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• more analyzed and diff seborn

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Commits on May 26, 2023

• ready for ms23

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• corr plots

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Commits on May 30, 2023

• ready for ms22

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Commits on May 31, 2023

• strip plots

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Commits on Jun 5, 2023

• updates

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Commits on Jun 6, 2023

• ms12 .54

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• axon seg

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Commits on Jun 7, 2023

• remove import

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• remove import

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• fix

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• fix

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• change data folder

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• change data folder

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• increase thruput

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• 3

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• 2

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• 2048

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Commits on Jun 8, 2023

• perm axon

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Commits on Jun 9, 2023

• ready MS10

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• analysis

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Commits on Jun 11, 2023

• bounds

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Commits on Jun 12, 2023

• collect results update

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• import

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• import

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• chunk size

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• chunk size

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• chunk size

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• chunk size

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• paths

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Commits on Jun 13, 2023

• fix path

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• path

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• another one

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Commits on Jun 23, 2023

• clear output

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• rerun

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Commits on Jun 29, 2023

• collect MS10

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Commits on Jul 10, 2023

• updates

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Commits on Jul 19, 2023

• changes

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Commits on Jul 24, 2023

• updates for liston talk

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Commits on Jul 25, 2023

• liston lab v1

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Commits on Jul 26, 2023

• midbrain add

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Commits on Jul 28, 2023

• updates

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Commits on Aug 2, 2023

• heatmap diffs

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Commits on Aug 28, 2023

• minor changes

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Commits on Aug 31, 2023

• make figs matt

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Commits on Sep 5, 2023

• update figures

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Commits on Sep 13, 2023

• nb changes

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Commits on Sep 21, 2023

• validated MS9

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Commits on Oct 2, 2023

• ready for ms33

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• ncpu

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• updates

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Commits on Oct 3, 2023

• processing vs vol chunk size

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• ncpu

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• chi sq within group

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Commits on Oct 4, 2023

• local json and ms33

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Commits on Oct 5, 2023

• update model ms33

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• all chunks

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• modify posix path for removal

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• fname fix

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• fname fix

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Commits on Oct 9, 2023

• rerun 8557

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Commits on Oct 10, 2023

• ready ms22

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Commits on Oct 11, 2023

• collect ms33

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• ms33 base s3

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Commits on Oct 12, 2023

• try again

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• inspect

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• update collect

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• redo

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• print exception

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• corners2

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• removal

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• make dir

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• only ms33

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• ncpu

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• redo more brains

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• updates

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• print

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• remove passing

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Commits on Oct 13, 2023

• one at a time

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• ms12 collect

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• ms9 ready

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Commits on Oct 14, 2023

• ms9 ready

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• remove comment

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• fill missing

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• try again

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• valerror

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• catchall

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Commits on Oct 15, 2023

• read local write s3

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• wrnog info

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Commits on Oct 17, 2023

• ready to redo ms32

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Commits on Oct 23, 2023

• ds

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• load

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• collect ms32

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Commits on Oct 24, 2023

• updates

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Commits on Oct 26, 2023

• ms9

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• ms9

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Commits on Oct 27, 2023

• ds methods

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• typo

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• ms9

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Commits on Nov 1, 2023

• blank 647

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• zero

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• base s3

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Commits on Nov 5, 2023

• s3 axon mask

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Commits on Nov 6, 2023

• ms39

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• ms39 path

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• ms39 path

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• base local

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Commits on Nov 7, 2023

• soma analysis

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• right transformed

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• info

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Commits on Nov 8, 2023

• upload

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• upoad

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• upload

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• except

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Commits on Nov 9, 2023

• ms21

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Commits on Nov 13, 2023

• 11537 redo

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• data

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Commits on Nov 14, 2023

• recollect ms12

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• local updates

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Commits on Nov 17, 2023

• nbs

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Commits on Nov 18, 2023

• collect 11527

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Commits on Nov 20, 2023

• updates

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Commits on Nov 21, 2023

• new figs

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Commits on Dec 4, 2023

• ms50 3 channels

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Commits on Dec 5, 2023

• ilr

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• merge

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Commits on Dec 6, 2023

• seg ms50-v2

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• read local

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Commits on Dec 8, 2023

• pca

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Commits on Dec 11, 2023

• nbs

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• black

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Commits on Dec 12, 2023

• updates

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• axon

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Commits on Dec 18, 2023

• ms25-v2

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• s3 local

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• data

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Commits on Dec 19, 2023

• nb

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• reg command

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Commits on Dec 22, 2023

• fixing atlas

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Commits on Dec 26, 2023

• mappings

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Commits on Dec 27, 2023

• ara fixes

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Commits on Jan 2, 2024

• filter

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Commits on Jan 3, 2024

• new vol

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• black and tutoriakl

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• remove dcor import

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• scatter plot

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• more tests

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Commits on Jan 4, 2024

• test apply

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• tests

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• test_util

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• test analyze

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• util x2

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• apply x2

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• test analyze

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