except

neurodata · Nov 8, 2023 · 57a1888 · 57a1888
1 parent c3c5ecb
commit 57a1888
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/experiments/BrainLine/scripts/upload_mask.py b/experiments/BrainLine/scripts/upload_mask.py
@@ -6,6 +6,7 @@
 from pathlib import Path
 import os
 from tqdm import tqdm
+from cloudvolume import EmptyVolumeException
 
 local_vol = CloudVolume("precomputed://file:///mnt/data/Neuroglancer_Data/2023_04_10/MS12/axon_mask")
 
@@ -61,6 +62,9 @@
 corners = _get_corners(local_vol.shape, local_vol.chunk_size)
 
 for corner in tqdm(corners):
-    s3_vol[corner[0][0]:corner[1][0],corner[0][1]:corner[1][1],corner[0][2]:corner[1][2]] = local_vol[corner[0][0]:corner[1][0],corner[0][1]:corner[1][1],corner[0][2]:corner[1][2]]
+    try:
+        s3_vol[corner[0][0]:corner[1][0],corner[0][1]:corner[1][1],corner[0][2]:corner[1][2]] = local_vol[corner[0][0]:corner[1][0],corner[0][1]:corner[1][1],corner[0][2]:corner[1][2]]
+    except EmptyVolumeException:
+        pass