[MNT] Updated husky scripts

[rmanaem]

• Closes Update husky scripts #237

NOTE: If this pull request is to be released, the release label must be applied once the review process is done to avoid the local and remote from going out of sync as a consequence of the bump version workflow run

Checklist

This section is for the PR reviewer

• PR has an interpretable title with a prefix ([ENH], [FIX], [REF], [TST], [CI], [MNT], [INF], [MODEL], [DOC]) (see our Contributing Guidelines for more info)
• PR has a label for the release changelog or skip-release (to be applied by maintainers only)
• PR links to GitHub issue with mention Closes #XXXX
• Tests pass
• Checks pass
• If the PR changes the participant-level and/or the dataset-level result file, the query-tool-results files in the neurobagel_examples repo have been regenerated

For new features:

• Tests have been added

For bug fixes:

• There is at least one test that would fail under the original bug conditions.

Summary by Sourcery

Build:

• Set up Husky to manage Git hooks and run checks before commits and after merges.

[sourcery-ai]

Reviewer's Guide by Sourcery

This pull request updates the husky scripts to use npx husky init instead of npx husky install to enable pre-commit and post-merge hooks. It also updates the prepare script in package.json to use husky instead of husky install.

Sequence diagram for updated Husky initialization process

sequenceDiagram
    participant D as Developer
    participant H as Husky
    participant G as Git Hooks

    Note over D,G: Old Flow
    D->>H: npx husky install
    H->>G: Install hooks

    Note over D,G: New Flow
    D->>H: npx husky init
    H->>G: Initialize and install hooks

    Note over D,G: Package.json prepare script
    D->>H: npm run prepare
    H->>G: Setup hooks automatically

Loading

File-Level Changes

Change	Details	Files
Updated husky initialization command	Changed the husky initialization command from npx husky install to npx husky init.	README.md
Updated prepare script	Changed the prepare script from husky install to husky.	package.json
Updated husky hooks	Updated the post-merge and pre-commit husky hooks.	.husky/post-merge .husky/pre-commit

Assessment against linked issues

Issue	Objective	Addressed	Explanation
#237	Update husky scripts to remove deprecated configuration that will fail in v10.0.0	✅

Possibly linked issues

• Update husky scripts #237: The PR closes issue 237 by updating husky scripts to enable pre-commit and post-merge hooks, directly addressing the dependency management and code quality improvements discussed in the issue.
• Update husky scripts #237: The PR closes the issue by updating husky scripts to resolve the deprecation warning.

---

Tips and commands

Interacting with Sourcery

• Trigger a new review: Comment @sourcery-ai review on the pull request.
• Continue discussions: Reply directly to Sourcery's review comments.
• Generate a GitHub issue from a review comment: Ask Sourcery to create an
  issue from a review comment by replying to it.
• Generate a pull request title: Write @sourcery-ai anywhere in the pull
  request title to generate a title at any time.
• Generate a pull request summary: Write @sourcery-ai summary anywhere in
  the pull request body to generate a PR summary at any time. You can also use
  this command to specify where the summary should be inserted.

Customizing Your Experience

Access your dashboard to:

• Enable or disable review features such as the Sourcery-generated pull request
  summary, the reviewer's guide, and others.
• Change the review language.
• Add, remove or edit custom review instructions.
• Adjust other review settings.

Getting Help

• Contact our support team for questions or feedback.
• Visit our documentation for detailed guides and information.
• Keep in touch with the Sourcery team by following us on X/Twitter, LinkedIn or GitHub.

[netlify]

✅ Deploy Preview for neurobagel-query ready!

Name	Link
🔨 Latest commit	4be9029
🔍 Latest deploy log	https://app.netlify.com/sites/neurobagel-query/deploys/6765de8d7b8d840008ee8e72
😎 Deploy Preview	https://deploy-preview-419--neurobagel-query.netlify.app
📱 Preview on mobile	Toggle QR Code... Use your smartphone camera to open QR code link.

---

To edit notification comments on pull requests, go to your Netlify site configuration.

[surchs]

Very nice, good thing to address. Thanks @rmanaem !

🧑‍🍳