Small edits in nls work on ants_multimodal

netstim · May 22, 2016 · e1e402c · e1e402c
1 parent bd71618
commit e1e402c
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Showing 3 changed files with 4 additions and 2 deletions.
diff --git a/connectomics/ea_isolate_fa.m b/connectomics/ea_isolate_fa.m
@@ -27,7 +27,7 @@ function ea_isolate_fa(directory,options)
 
 % Constants DTI
 parametersDTI=[];
-parametersDTI.BackgroundThreshold=150;
+parametersDTI.BackgroundThreshold=120;
 parametersDTI.WhiteMatterExtractionThreshold=0.10;
 parametersDTI.textdisplay=true;
 

diff --git a/ea_normalize_ants_multimodal.m b/ea_normalize_ants_multimodal.m
@@ -30,7 +30,7 @@
 usebrainmask=1;
 
 directory=[options.root,options.patientname,filesep];
-
+options.coregmr.method=2; % hard-code to ANTs for now here.
 cnt=1;
 
 if usebrainmask

diff --git a/ext_libs/dcm2nii/ea_dcm2nii.m b/ext_libs/dcm2nii/ea_dcm2nii.m
@@ -25,5 +25,7 @@ function ea_dcm2nii(inputimage)
     delete([pth,filesep,'o',fn,ext]);
     movefile([pth,filesep,'co',fn,ext],inputimage);
 catch
+    try
     movefile([pth,filesep,'c',fn,ext],inputimage);
+    end
 end