changed brainsfit.m to ea_brainsfit.m

netstim · Oct 27, 2015 · d55fb6f · d55fb6f
1 parent be316dd
commit d55fb6f
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Showing 2 changed files with 3 additions and 4 deletions.
diff --git a/ea_coregctmri_brainsfit.m b/ea_coregctmri_brainsfit.m
@@ -5,16 +5,15 @@
 % Andreas Horn
 
 if ischar(options) % return name of method.
-    varargout{1}='BRAINSFit';
+    varargout{1}='BRAINSFit (recommended)';
     varargout{2}={'SPM8','SPM12'};
     varargout{3}=['nan']; % suggestion for alpha-parameter.
     return
 end
 
 
-brainsfit([options.root,options.patientname,filesep,options.prefs.prenii_unnormalized],...
+ea_brainsfit([options.root,options.patientname,filesep,options.prefs.prenii_unnormalized],...
           [options.root,options.patientname,filesep,options.prefs.rawctnii_unnormalized],...
           [options.root,options.patientname,filesep,options.prefs.ctnii_coregistered])
-    ' --useRigid --useAffine --samplingPercentage 0.005 --removeIntensityOutliers 0.005 --initializeTransformMode useGeometryAlign --interpolationMode Linear']);
 
 
diff --git a/ext_libs/BRAINSFIT/brainsfit.m → ext_libs/BRAINSFIT/ea_brainsfit.m b/ext_libs/BRAINSFIT/brainsfit.m → ext_libs/BRAINSFIT/ea_brainsfit.m
@@ -1,4 +1,4 @@
-function brainsfit(fixedfilename, movingfilename, coregisteredoutputvolume)
+function ea_brainsfit(fixedfilename, movingfilename, coregisteredoutputvolume)
 
 % Wrapper for BRAINSFit