Removing the prescription of jupytext and its presence from the cooki…

…ecutter
nestauk · Dec 20, 2024 · f01d2b2 · f01d2b2
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diff --git a/docs/docs/structure.md b/docs/docs/structure.md
@@ -315,7 +315,6 @@ You can write reports in markdown and put them in `outputs/reports` and referenc
 ├── requirements.txt                 |  PYTHON DEPENDENCIES NEEDED TO RUN THE CODE
 ├── requirements_dev.txt             |  PYTHON DEV DEPENDENCIES (e.g. building docs/running tests)
 ├── inputs/                          |  INPUTS (should be immutable)
-├── jupytext.toml                    |  JUPYTEXT CONFIGURATION
 ├── LICENSE                          |
 ├── outputs/                          |  OUTPUTS PRODUCED FROM THE PROJECT
 ├── Makefile                         |  TASKS TO COORDINATE PROJECT (`make` shows available commands)

diff --git a/{{ cookiecutter.repo_name }}/.github/pull_request_template.md b/{{ cookiecutter.repo_name }}/.github/pull_request_template.md
@@ -14,7 +14,6 @@ Please pay special attention to ...
 
 # Checklist:
 
-- [ ] I have refactored my code out from `notebooks/`
 - [ ] I have checked the code runs
 - [ ] I have tested the code
 - [ ] I have run `pre-commit` and addressed any issues not automatically fixed

diff --git a/{{ cookiecutter.repo_name }}/.gitignore b/{{ cookiecutter.repo_name }}/.gitignore
@@ -20,9 +20,6 @@ research_daps/
 metaflow.s3.*
 .run_id
 
-# Notebooks (use jupytext instead!)
-*.ipynb
-
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]

diff --git a/{{ cookiecutter.repo_name }}/jupytext.toml b/{{ cookiecutter.repo_name }}/jupytext.toml
diff --git a/{{ cookiecutter.repo_name }}/requirements_dev.txt b/{{ cookiecutter.repo_name }}/requirements_dev.txt
@@ -1,5 +1,4 @@
 ipykernel
-jupytext
 flake8
 flake8-black
 flake8-import-order