fix the csv not being copied to home

nesi · Aug 27, 2024 · 4cb2276 · 4cb2276
1 parent 420626e
commit 4cb2276
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diff --git a/submit.yml.erb b/submit.yml.erb
@@ -13,7 +13,7 @@ script:
   native:
     container:
       name: "indigidatar"
-      image: "ghcr.io/nesi/training-environment-rstudio-indigidata-app:v0.4.0"
+      image: "ghcr.io/nesi/training-environment-rstudio-indigidata-app:v0.5.0"
       command: ["/bin/bash","-l","<%= staged_root %>/job_script_content.sh"]
       restart_policy: 'OnFailure'
       env:

diff --git a/template/script.sh.erb b/template/script.sh.erb
@@ -43,6 +43,7 @@ echo "Starting up rserver..."
 
 # copy data
 rsync --ignore-existing -avz /var/lib/OTU_table.biom ~/OTU_table.biom
+rsync --ignore-existing -avz /var/lib/spiders_df.csv ~/spiders_df.csv
 
 # launch rserver
 rserver \