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Merge pull request #17 from nesi/AGDR-484
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natnesi authored Apr 23, 2024
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title: data.agdr.org.nz 08 August 2023

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description: "AGDR release notes for 8 August 2023"

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---

Versions:

`Dictionary: v0.2.1-9-g520a259 (nesi_2023_05_08)`

`Submission (sheepdog): v2023.06`

`Portal: v5`

Internal:

`indexd: 2023.06`

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`fence: 2022.05`

`arborist: 2023.06`

`peregrine: 2023.06`

`sheepdog: 2023.6`

`guppy: 2023.06`

`elastic search: oss:6.8.23`

`pidgin: 2023.06`

`nginx: 2023.06 (from quay.io/cdis/nginx)`

`tube: 2022.05`

`gen3-spark: 2023.06`

`NeSI metadata service: v4.2`

`postgres 14.4`

Note: JupyterHub, Kibana are not used and not updated

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## New and Improved

- New portal version aligned with GEN3

- New datasets added
- AGDR00037
- Geoghegan, J. (2023). Total infectome investigation of diphtheritic stomatitis in yellow-eyed penguins (Megadyptes antipodes) reveals a novel and abundant megrivirus [Data set]. Aotearoa Genomic Data Repository. [https://doi.org/10.57748/Q06Y-6653](https://doi.org/10.57748/Q06Y-6653)

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- AGDR00035
- Fraser, C. (2023). Microbiome and genetic biogeography of Durvillaea [Data set]. Aotearoa Genomic Data Repository. [https://doi.org/10.57748/RDXN-1598](https://doi.org/10.57748/RDXN-1598)

## Fixes

- open to collaborate page email address: the recipient is now getting populated in an email client

- https://test.agdr.org.nz/TAONGA-KAKAPO official project page now opens in a separate tab

- Removing the starting G in "GKakapo125+ genome sequencing"

(Note: Repo.data.nesi.org.nz was updated on the 3rd of August with the following version differences: indexd 2022.05 and peregrine: 2022.05)

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