v0.4.0

What's Changed

• reorganize demos, use mesviz by @kushalkolar in #242
• int32 not sufficient for nbytes by @nspiller in #279

New Contributors

• @nspiller made their first contribution in #279

Full Changelog: v0.3.0...v0.4.0

v0.3.0

What's Changed

• allow passing kwargs from LazyVideo to decord.VideoReader by @kushalkolar in #204
• update notebooks by @clewis7 in #218
• Update install instructions for caimanmanager by @rly in #228
• fix get_params_diff(), return as dataframe instead of series of dicts by @kushalkolar in #233
• Small fixes by @kushalkolar in #238

New Contributors

• @rly made their first contribution in #228

Full Changelog: v0.2.2...v0.3.0

v0.2.2

What's Changed

• fixing bug in time() by @clewis7 in #188
• fix WrongAlgorithMException error message in @validate() by @kushalkolar in #189
• allow manually setting shape by @kushalkolar in #192
• allow removing failed or not run items by @kushalkolar in #202

Full Changelog: v0.2.1...v0.2.2

v0.2.1

Fixes

• better cnmfe runner, #184
• added cnmfe demo notebook

What's Changed

• fix cnmfe algo runner by @kushalkolar in #184
• cnmfe demo by @kushalkolar in #185

Full Changelog: v0.2.0...v0.2.1

v0.2.0

New

• LazyVideo is a new LazyArray type which uses decord for fast random access loading of frames #175
• caiman.get_input_movie() can take kwargs that are passed to the movie reader function. #167

Fixes

• LazyArray types did not work with window functions in fastplotlib.ImageWidget, they work after #175. The specific fix was to allow LazyArray to work with range objects that are passed by fastplotlib.ImageWidget: 49a4004

What's Changed

• more LazyArray stuff by @kushalkolar in #175
• allow movie_reader kwargs for caiman.get_input_movie() by @kushalkolar in #167

Full Changelog: v0.1.0...v0.2.0

v0.1.0

First full release!

Breaking changes from the beta

• Introduced LazyArrays for various CNMF outputs, #140
• better handling of input movies #146

Fixes

• #130, fix #116 by adding a local backend in that is used by default on Windows, completing bypassing all the subprocess stuff
• #126, safety check to prevent small subdataframe from overwriting a large dataframe on disk, default max delta of num_rows is 1
• other changes see: https://github.com/nel-lab/mesmerize-core/milestone/3?closed=1

All PRs in this release

• fixing threshold for tests to pass in pipeline by @clewis7 in #115
• make sure parent raw data path exists, else throw exception by @kushalkolar in #118
• allow passing pd.Series batch item directly as input_movie_path to'caiman.add_item() by @kushalkolar in #124
• safety check to prevent small sub dataframe from overwriting full dataframe on disk by @kushalkolar in #126
• add local backend to caiman.run() by @kushalkolar in #131
• movie reader, tiff memmap, caiman memmap and pims by @kushalkolar in #146
• made better docstrings by @kushalkolar in #147
• Popen.wait() called by default using 'wait' kwarg to caiman.run() by @kushalkolar in #148
• Lazy arrays by @kushalkolar in #140
• V0.1 dev -> master by @kushalkolar in #155
• adding timestamp features by @clewis7 in #141

Full Changelog: v0.1.0.b1...v0.1.0

v0.1.0.b1

Initial beta "release" to get packaging up and running.

What's Changed

• Refactor mcorr funcs by @ArjunPutcha in #1
• get CI working by @kushalkolar in #2
• Create yapf check by @kushalkolar in #8
• pytests for output paths mcorr, cnmf, cnmfe by @clewis7 in #10
• fix #15 by @kushalkolar in #17
• Get com coords by @ArjunPutcha in #9
• fixes #14 by @kushalkolar in #18
• Use black formater by @kushalkolar in #19
• use CAIMAN_TEMP to store mcorr memmap and then move back to parent dir by @kushalkolar in #22
• update CI pipelines by @kushalkolar in #27
• View mcorr shifts by @ArjunPutcha in #21
• Yet more pytests by @clewis7 in #29
• update workflows by @kushalkolar in #32
• lint with black by @kushalkolar in #33
• Fix bug to accept ixs_components param for updating spatial components by @ArjunPutcha in #34
• start docs, basic API documented by @kushalkolar in #35
• dev into master by @kushalkolar in #36
• example notebooks by @kushalkolar in #37
• update example nb by @kushalkolar in #42
• Even more pytests by @clewis7 in #43
• making caiman.run() common extension callbacks_finished arg optional by @clewis7 in #45
• master <- dev by @kushalkolar in #46
• new spec for batch item params, put algo params in key, tests pass by @kushalkolar in #50
• refactor batch item file management by @kushalkolar in #51
• cnmf extension for get residuals by @clewis7 in #47
• adding idx_component functionality to reconstructed movie extension by @clewis7 in #54
• fix typo by @ArjunPutcha in #59
• caiman extension to get input movie using pims or caiman.load_memmap by @kushalkolar in #60
• master <-- dev by @kushalkolar in #64
• splitting reconstructed movie into two functions by @clewis7 in #58
• creating cache for faster access to results of previous cnmf extension calls by @clewis7 in #62
• updating tests to cnmf, still need to upload to zenodo and fix download by @clewis7 in #73
• Api renaming by @kushalkolar in #79
• component indices parser, cache bug fix by @kushalkolar in #82
• Remove pyqt by @kushalkolar in #77
• docstrings, cleanup, more API renaming by @kushalkolar in #83
• add comments as column for batch dataframe, tests pass by @kushalkolar in #68
• lots-of-stuff <- master by @kushalkolar in #84
• custom temporal components for get_rcm() and kwargs are optional for caiman.run() by @kushalkolar in #85
• dfof, eval, other final things by @kushalkolar in #87
• better checks for parent data path by @kushalkolar in #88
• Doc examples by @kushalkolar in #91
• more docs stuff by @kushalkolar in #92
• try to make docs autobuild by @kushalkolar in #94
• things for windows compatibility by @kushalkolar in #95
• added caiman.remove_item(), caiman.get_children() and caiman.get_parent() by @kushalkolar in #98
• rename dataframe column "name" to "item_name" by @kushalkolar in #99
• started input movie methods, experimental for now by @kushalkolar in #101
• fixing threshold for cache test to pass CI pipeline by @clewis7 in #102
• use pandas 1.5.0rc0 by @kushalkolar in #104
• added get_params_diffs() feature, works by @kushalkolar in #112
• added caiman.save_to_disk() by @kushalkolar in #113
• last bits of features before initial beta release by @kushalkolar in #114
• organizing stuff for release by @kushalkolar in #110

New Contributors

• @ArjunPutcha made their first contribution in #1

Full Changelog: https://github.com/nel-lab/mesmerize-core/commits/v0.1.0.b1