update cnmfe nb

notebooks/cnmfe.ipynb

@@ -291,7 +291,7 @@
    "outputs": [],
    "source": [
     "# create a slider for gSig_filt\n",
-    "slider_gsig_filt = IntSlider(value=3, min=1, max=33, step=2,  description=\"gSig_filt\")\n",
+    "slider_gsig_filt = IntSlider(value=3, min=1, max=33, step=1,  description=\"gSig_filt\")\n",
     "\n",
     "def apply_filter(frame):\n",
     "    # read slider value\n",
@@ -309,18 +309,20 @@
     "\n",
     "# input movie will be shown on left, filtered on right\n",
     "iw_gs = fpl.ImageWidget(\n",
-    "    data=[input_movie, input_movie.copy()],\n",
+    "    data=[input_movie, input_movie],\n",
     "    frame_apply=funcs,\n",
-    "    names=[\"raw\", \"filtered\"],\n",
+    "    names=[\"raw\", f\"filtered\"],\n",
     "    grid_plot_kwargs={\"size\": (1200, 600)},\n",
     "    cmap=\"gnuplot2\"\n",
     ")\n",
     "\n",
+    "iw_gs.gridplot[\"filtered\"].set_title(f\"filtered σ={slider_gsig_filt.value}\")\n",
+    "\n",
     "def force_update(*args):\n",
-    "    # kinda hacky but forces the images to update \n",
-    "    # when the gSig_filt slider is moved\n",
+    "    # forces the images to update when the gSig_filt slider is moved\n",
     "    iw_gs.current_index = iw_gs.current_index\n",
     "    iw_gs.reset_vmin_vmax()\n",
+    "    iw_gs.gridplot[\"filtered\"].set_title(f\"filtered σ={slider_gsig_filt.value}\")\n",
     "\n",
     "iw_gs.reset_vmin_vmax()\n",
     "    \n",
@@ -332,7 +334,9 @@
   {
    "cell_type": "markdown",
    "id": "511192a7-6e25-49cf-8175-0ecfb0001662",
-   "metadata": {},
+   "metadata": {
+    "jp-MarkdownHeadingCollapsed": true
+   },
    "source": [
     "# reset vmin vmax when necessary!"
    ]
@@ -877,9 +881,7 @@
     "# mcorr vids, we will display thresholded mcorr vids\n",
     "mcorr_vids = [mcorr_movie.astype(np.float32) for i in range(4)]\n",
     "\n",
-    "# sync the threshold image widget with the corr-pnr plot\n",
     "threshold_grid_plot_kwargs = {\n",
-    "    \"controllers\": [[iw_corr_pnr.gridplot[\"corr\"].controller]*2]*2,\n",
     "    \"size\": (650, 600)\n",
     "}\n",
     "\n",
@@ -891,6 +893,10 @@
     "    cmap=\"gnuplot2\"\n",
     ")\n",
     "\n",
+    "# sync the threshold image widget with the corr-pnr plot\n",
+    "for subplot in iw_thres_movie.gridplot:\n",
+    "    subplot.controller = iw_corr_pnr.gridplot[\"corr\"].controller\n",
+    "\n",
     "# display threshold of the spatially filtered movie\n",
     "def spatial_filter(frame):\n",
     "    f = high_pass_filter_space(frame, (3, 3))\n",
@@ -1299,7 +1305,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.11.2"
+   "version": "3.11.3"
   }
  },
  "nbformat": 4,