[skip ci] Updates

nanotheorygroup · Feb 20, 2024 · c1ef556 · c1ef556
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commit c1ef556
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: e67de8da8191d4856353d089a2c6da5d
+config: 831452f6d9edd0d4fa8145fc9b6548e2
 tags: 645f666f9bcd5a90fca523b33c5a78b7
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diff --git a/_images/math/f74bbc8fffefdd30b8337f826ac200227c63a7e8.png b/_images/math/f74bbc8fffefdd30b8337f826ac200227c63a7e8.png
diff --git a/_images/math/fd95d09370796bc141e065467fd123c60a6dc276.png b/_images/math/fd95d09370796bc141e065467fd123c60a6dc276.png
diff --git a/_images/math/fd98d00ba6c2e3ed17d7d120df78b2516d85cb9b.png b/_images/math/fd98d00ba6c2e3ed17d7d120df78b2516d85cb9b.png
diff --git a/_images/math/fe6c787acf05aa597cff6053070b879317a40ef3.png b/_images/math/fe6c787acf05aa597cff6053070b879317a40ef3.png
diff --git a/_images/math/fe82a5f419c311d420c88119ffa63f4f85ae04ea.png b/_images/math/fe82a5f419c311d420c88119ffa63f4f85ae04ea.png
diff --git a/_modules/index.html b/_modules/index.html
@@ -1,10 +1,10 @@
 
 <!DOCTYPE html>
 
-<html>
+<html lang="en">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0">
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <meta name="viewport" content="width=device-width,initial-scale=1">
   <meta http-equiv="x-ua-compatible" content="ie=edge">
   <meta name="lang:clipboard.copy" content="Copy to clipboard">
@@ -56,13 +56,13 @@
 
 
     <title>Overview: module code &#8212; kALDo  documentation</title>
-    <link rel="stylesheet" href="../_static/material.css" type="text/css" />
-    <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
-    <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
+    <link rel="stylesheet" type="text/css" href="../_static/material.css" />
+    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
     <script src="../_static/jquery.js"></script>
     <script src="../_static/underscore.js"></script>
+    <script src="../_static/_sphinx_javascript_frameworks_compat.js"></script>
     <script src="../_static/doctools.js"></script>
-    <script src="../_static/language_data.js"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
@@ -435,7 +435,7 @@ <h1 id="modules-index--page-root">All modules for which code is available</h1>
 
           </div>
             Created using
-            <a href="http://www.sphinx-doc.org/">Sphinx</a> 3.1.1.
+            <a href="http://www.sphinx-doc.org/">Sphinx</a> 5.0.1.
              and
             <a href="https://github.com/bashtage/sphinx-material/">Material for
               Sphinx</a>

diff --git a/_modules/kaldo/conductivity.html b/_modules/kaldo/conductivity.html
@@ -1,10 +1,10 @@
 
 <!DOCTYPE html>
 
-<html>
+<html lang="en">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0">
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <meta name="viewport" content="width=device-width,initial-scale=1">
   <meta http-equiv="x-ua-compatible" content="ie=edge">
   <meta name="lang:clipboard.copy" content="Copy to clipboard">
@@ -56,13 +56,13 @@
 
 
     <title>kaldo.conductivity &#8212; kALDo  documentation</title>
-    <link rel="stylesheet" href="../../_static/material.css" type="text/css" />
-    <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
-    <script id="documentation_options" data-url_root="../../" src="../../_static/documentation_options.js"></script>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
+    <link rel="stylesheet" type="text/css" href="../../_static/material.css" />
+    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
     <script src="../../_static/jquery.js"></script>
     <script src="../../_static/underscore.js"></script>
+    <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
     <script src="../../_static/doctools.js"></script>
-    <script src="../../_static/language_data.js"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -437,7 +437,7 @@ <h1 id="modules-kaldo-conductivity--page-root">Source code for kaldo.conductivit
                           <span class="n">diffusivity_threshold</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
     <span class="c1"># TODO: cache this</span>
     <span class="n">sigma</span> <span class="o">=</span> <span class="mi">2</span> <span class="o">*</span> <span class="p">(</span><span class="n">diffusivity_bandwidth</span><span class="p">[:,</span> <span class="n">np</span><span class="o">.</span><span class="n">newaxis</span><span class="p">]</span> <span class="o">+</span> <span class="n">diffusivity_bandwidth</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">newaxis</span><span class="p">,</span> <span class="p">:])</span>
-    <span class="n">physical_mode</span> <span class="o">=</span> <span class="n">physical_mode</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">bool</span><span class="p">)</span>
+    <span class="n">physical_mode</span> <span class="o">=</span> <span class="n">physical_mode</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">bool</span><span class="p">)</span>
     <span class="n">delta_energy</span> <span class="o">=</span> <span class="n">omega</span><span class="p">[:,</span> <span class="n">np</span><span class="o">.</span><span class="n">newaxis</span><span class="p">]</span> <span class="o">-</span> <span class="n">omega</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">newaxis</span><span class="p">,</span> <span class="p">:]</span>
     <span class="n">kernel</span> <span class="o">=</span> <span class="n">curve</span><span class="p">(</span><span class="n">delta_energy</span><span class="p">,</span> <span class="n">sigma</span><span class="p">)</span>
     <span class="k">if</span> <span class="n">diffusivity_threshold</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
@@ -637,7 +637,7 @@ <h1 id="modules-kaldo-conductivity--page-root">Source code for kaldo.conductivit
         <span class="n">gamma_tensor</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">phonons</span><span class="o">.</span><span class="n">_ps_gamma_and_gamma_tensor</span><span class="p">[:,</span> <span class="mi">2</span><span class="p">:]</span>
         <span class="n">index</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">outer</span><span class="p">(</span><span class="n">physical_mode</span><span class="p">,</span> <span class="n">physical_mode</span><span class="p">)</span>
         <span class="n">n_physical</span> <span class="o">=</span> <span class="n">physical_mode</span><span class="o">.</span><span class="n">sum</span><span class="p">()</span>
-        <span class="n">log_size</span><span class="p">((</span><span class="n">n_physical</span><span class="p">,</span> <span class="n">n_physical</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s1">'_scattering_matrix'</span><span class="p">)</span>
+        <span class="n">log_size</span><span class="p">((</span><span class="n">n_physical</span><span class="p">,</span> <span class="n">n_physical</span><span class="p">),</span> <span class="nb">float</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s1">'_scattering_matrix'</span><span class="p">)</span>
         <span class="n">gamma_tensor</span> <span class="o">=</span> <span class="n">gamma_tensor</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="n">n_physical</span><span class="p">,</span> <span class="n">n_physical</span><span class="p">))</span>
         <span class="k">if</span> <span class="n">is_rescaling_population</span><span class="p">:</span>
             <span class="n">n</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">phonons</span><span class="o">.</span><span class="n">population</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">n_phonons</span><span class="p">))[</span><span class="n">physical_mode</span><span class="p">]</span>
@@ -968,7 +968,7 @@ <h1 id="modules-kaldo-conductivity--page-root">Source code for kaldo.conductivit
 
           </div>
             Created using
-            <a href="http://www.sphinx-doc.org/">Sphinx</a> 3.1.1.
+            <a href="http://www.sphinx-doc.org/">Sphinx</a> 5.0.1.
              and
             <a href="https://github.com/bashtage/sphinx-material/">Material for
               Sphinx</a>

diff --git a/_modules/kaldo/forceconstants.html b/_modules/kaldo/forceconstants.html
@@ -1,10 +1,10 @@
 
 <!DOCTYPE html>
 
-<html>
+<html lang="en">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0">
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <meta name="viewport" content="width=device-width,initial-scale=1">
   <meta http-equiv="x-ua-compatible" content="ie=edge">
   <meta name="lang:clipboard.copy" content="Copy to clipboard">
@@ -56,13 +56,13 @@
 
 
     <title>kaldo.forceconstants &#8212; kALDo  documentation</title>
-    <link rel="stylesheet" href="../../_static/material.css" type="text/css" />
-    <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
-    <script id="documentation_options" data-url_root="../../" src="../../_static/documentation_options.js"></script>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
+    <link rel="stylesheet" type="text/css" href="../../_static/material.css" />
+    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
     <script src="../../_static/jquery.js"></script>
     <script src="../../_static/underscore.js"></script>
+    <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
     <script src="../../_static/doctools.js"></script>
-    <script src="../../_static/language_data.js"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -643,7 +643,7 @@ <h1 id="modules-kaldo-forceconstants--page-root">Source code for kaldo.forcecons
 
           </div>
             Created using
-            <a href="http://www.sphinx-doc.org/">Sphinx</a> 3.1.1.
+            <a href="http://www.sphinx-doc.org/">Sphinx</a> 5.0.1.
              and
             <a href="https://github.com/bashtage/sphinx-material/">Material for
               Sphinx</a>