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21 Open 32 Closed
21 Open 32 Closed
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Issues list

No FASTQ File Generated After Successful Guppy Basecalling
#56 opened Aug 23, 2024 by Echo-0301
merging original duplex bam file with the addtional split duplex bam file
#55 opened Dec 20, 2023 by sgujjaBebio
1
split_on_adapter: Missing internal adapter/primer from the middle of the main read
#53 opened Sep 27, 2023 by Gazal90
Low number of good pairs after filtering
#52 opened Sep 11, 2023 by myxotheles
1
guppy_duplex ValueError: not enough values to unpack (expected 4, got 3)
#51 opened Jul 13, 2023 by dkastl1
5
issue with split_on_adapter output
#47 opened Apr 27, 2023 by itslittman
17
Unexpected base in duplex call
#46 opened Apr 27, 2023 by dpaudel-tb
4
Extracting duplex reads for multiplexed samples
#45 opened Apr 27, 2023 by dpaudel-tb
2
promethion good pairs: 0
#44 opened Apr 18, 2023 by bef22
3
question on split pairs
#43 opened Apr 17, 2023 by caonetto
3
split_pod5 supported seed types error
#41 opened Apr 5, 2023 by mp15
3
Positional arguments (especially seqkit_stats_nosecondary) in duplex_tools assess_split_on_adapter
#40 opened Apr 3, 2023 by rocpv1977
1
pairs.txt file empty, but pairs_from_bam/pair_ids.txt not empty
#35 opened Feb 6, 2023 by avilella
1
Unexpected input file name changes output file file name format on split_on_adapter bug Something isn't working
#30 opened Jan 12, 2023 by groodri
1
Question - Split on adapter
#29 opened Dec 19, 2022 by jagos01
10
Try edlib for faster duplex matching
#28 opened Dec 15, 2022 by olawa
1
Combining reads post duplex basecalling for assembly
#25 opened Nov 4, 2022 by surabhiranavat
5
specify custom adapters to split_on_adapter
#19 opened Sep 5, 2022 by MortenEneberg
14
Document the relationship between ont-guppy-duplex-pipeline and duplex_tools
#18 opened Aug 26, 2022 by tbooth
3
Combining split_on_adapter with duplex calling
#17 opened Aug 10, 2022 by Coryza
7
Feature request: split_on_adapter print each alignment within a read that results in a split (multiple splits)
#14 opened Jun 27, 2022 by callumparr
5
ProTip! Exclude everything labeled bug with -label:bug.