requirements: bump module versions

closes reanahub#220
mvidalgarcia · Feb 3, 2022 · 1572357 · 1572357
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commit 1572357
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diff --git a/requirements.txt b/requirements.txt
@@ -4,56 +4,56 @@
 #
 #    pip-compile --output-file=requirements.txt requirements.in setup.py
 #
-adage==0.10.1             # via reana-commons, yadage
+adage==0.10.3             # via reana-commons, yadage
 amqp==2.6.1               # via kombu
 appdirs==1.4.4            # via fs
-attrs==21.2.0             # via jsonschema
+attrs==21.4.0             # via jsonschema
 bravado-core==5.17.0      # via bravado
 bravado==10.3.2           # via reana-commons
-certifi==2021.5.30        # via requests
-charset-normalizer==2.0.6  # via requests
+certifi==2021.10.8        # via requests
+charset-normalizer==2.0.11  # via requests
 checksumdir==1.1.9        # via packtivity, reana-commons, reana-workflow-engine-yadage (setup.py), yadage
-click==8.0.1              # via packtivity, reana-commons, yadage, yadage-schemas
-decorator==5.1.0          # via jsonpath-rw, networkx
-fs==2.4.13                # via reana-commons
+click==8.0.3              # via packtivity, reana-commons, yadage, yadage-schemas
+decorator==5.1.1          # via jsonpath-rw
+fs==2.4.14                # via reana-commons
 glob2==0.7                # via packtivity, yadage
-graphviz==0.17            # via reana-workflow-engine-yadage (setup.py)
-idna==3.2                 # via jsonschema, requests
+graphviz==0.19.1          # via reana-workflow-engine-yadage (setup.py)
+idna==3.3                 # via jsonschema, requests
 jq==0.1.7                 # via -r requirements.in, packtivity, yadage
 jsonpath-rw==1.4.0        # via packtivity, yadage
-jsonpointer==2.1          # via jsonschema, packtivity, yadage
+jsonpointer==2.2          # via jsonschema, packtivity, yadage
 jsonref==0.2              # via bravado-core, packtivity, yadage, yadage-schemas
 jsonschema[format]==3.2.0  # via bravado-core, packtivity, reana-commons, yadage, yadage-schemas
 kombu==4.6.11             # via reana-commons
 mock==3.0.5               # via packtivity, reana-commons, reana-workflow-engine-yadage (setup.py)
 monotonic==1.6            # via bravado
 msgpack-python==0.5.6     # via bravado
-msgpack==1.0.2            # via bravado-core
-networkx==1.11            # via adage, reana-workflow-engine-yadage (setup.py)
-packtivity==0.14.21       # via reana-workflow-engine-yadage (setup.py), yadage
+msgpack==1.0.3            # via bravado-core
+networkx==2.6.3           # via adage
+packtivity==0.14.24       # via yadage
 ply==3.11                 # via jsonpath-rw
-psutil==5.8.0             # via packtivity, yadage
-pydot2==1.0.33            # via reana-workflow-engine-yadage (setup.py)
+psutil==5.9.0             # via yadage
+pydot==1.4.2              # via reana-workflow-engine-yadage (setup.py)
 pydotplus==2.0.2          # via reana-workflow-engine-yadage (setup.py)
-pygraphviz==1.7           # via reana-workflow-engine-yadage (setup.py)
-pyparsing==2.4.7          # via pydot2, pydotplus
-pyrsistent==0.18.0        # via jsonschema
+pygraphviz==1.8           # via -r requirements.in
+pyparsing==3.0.7          # via pydot, pydotplus
+pyrsistent==0.18.1        # via jsonschema
 python-dateutil==2.8.2    # via bravado, bravado-core
 pytz==2021.3              # via bravado-core, fs
 pyyaml==5.4.1             # via bravado, bravado-core, packtivity, reana-commons, yadage, yadage-schemas
 reana-commons[yadage]==0.8.3a1	# via reana-workflow-engine-yadage (setup.py)
-requests[security]==2.26.0  # via bravado, packtivity, reana-workflow-engine-yadage (setup.py), yadage, yadage-schemas
+requests[security]==2.27.1  # via bravado, packtivity, reana-workflow-engine-yadage (setup.py), yadage, yadage-schemas
 rfc3987==1.3.8            # via jsonschema, reana-workflow-engine-yadage (setup.py)
-simplejson==3.17.5        # via bravado, bravado-core
-six==1.16.0               # via bravado, bravado-core, fs, jsonpath-rw, jsonschema, mock, python-dateutil
+simplejson==3.17.6        # via bravado, bravado-core
+six==1.16.0               # via bravado, bravado-core, fs, jsonpath-rw, jsonschema, mock, python-dateutil, yadage-schemas
 strict-rfc3339==0.7       # via jsonschema
-swagger-spec-validator==2.7.3  # via bravado-core
-typing-extensions==3.10.0.2  # via bravado
-urllib3==1.26.7           # via requests
+swagger-spec-validator==2.7.4  # via bravado-core
+typing-extensions==4.0.1  # via bravado
+urllib3==1.26.8           # via requests
 vine==1.3.0               # via amqp
 webcolors==1.11.1         # via jsonschema
 werkzeug==2.0.2           # via reana-commons
-yadage-schemas==0.10.6    # via packtivity, reana-commons, yadage
+yadage-schemas==0.10.7    # via packtivity, reana-commons, yadage
 yadage==0.20.1            # via reana-commons
 
 # The following packages are considered to be unsafe in a requirements file:

diff --git a/setup.py b/setup.py
@@ -44,9 +44,7 @@
     "checksumdir>=1.1.4,<1.2",
     "graphviz>=0.12",  # FIXME needed only if yadage visuale=True.
     "mock>=3.0,<4",
-    "networkx==1.11",
-    "packtivity==0.14.21",
-    "pydot2>=1.0.33",  # FIXME needed only if yadage visuale=True.
+    "pydot>=1.0.29",  # FIXME needed only if yadage visuale=True.
     "pydotplus>=2.0.2",  # FIXME needed only if yadage visuale=True.
     "pygraphviz>=1.5",  # FIXME needed only if yadage visuale=True.
     "reana-commons[yadage]>=0.8.3a1,<0.9.0",