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fixed some testing problems
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@mvertens
mvertens committed Nov 14, 2024
1 parent c685a27 commit b7d29df
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Showing 3 changed files with 40 additions and 44 deletions.
12 changes: 4 additions & 8 deletions bld/CLMBuildNamelist.pm
View file
Original file line number Diff line number Diff line change
Expand Up @@ -978,7 +978,7 @@ sub setup_cmdl_bgc {
# Set soil matrix (which is needed later for spinup)
$var = "use_soil_matrixcn";
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, $var,
, 'use_fates'=>$nl_flags->{'use_fates'},
, 'use_fates'=>$nl_flags->{'use_fates'},
, 'soil_decomp_method'=>$nl_flags->{'soil_decomp_method'},
, 'phys'=>$nl_flags->{'phys'}, clm_accelerated_spinup=>$nl_flags->{'clm_accelerated_spinup'} );
if ( &value_is_true($nl->get_value($var)) ) {
Expand Down Expand Up @@ -1214,7 +1214,7 @@ sub setup_cmdl_spinup {
if ( &value_is_true($nl_flags->{'use_cn'}) ) {
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition,
$defaults, $nl, "spinup_state", clm_accelerated_spinup=>$nl_flags->{'clm_accelerated_spinup'},
use_cn=>$nl_flags->{'use_cn'}, use_fates=>$nl_flags->{'use_fates'},
use_cn=>$nl_flags->{'use_cn'}, use_fates=>$nl_flags->{'use_fates'},
use_soil_matrixcn=>$nl_flags->{"use_soil_matrixcn"} );
if ( $nl->get_value("spinup_state") ne 0 ) {
$nl_flags->{'bgc_spinup'} = "on";
Expand Down Expand Up @@ -4148,12 +4148,8 @@ sub setup_logic_megan {
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'megan_factors_file');
}
if ( defined($nl->get_value('megan_specifier')) ||
defined($nl->get_value('megan_factors_file')) ) {
defined($nl->get_value('megan_factors_file')) ) {
check_megan_spec( $opts, $nl, $definition );
if ( &value_is_true( $nl_flags->{'use_fates'} ) ) {
$log->warning("MEGAN can NOT be on when FATES is also on.\n" .
" Use the '-no-megan' option when '-bgc fates' is activated");
}
}
}

Expand Down Expand Up @@ -4966,7 +4962,7 @@ sub setup_logic_exice {
# excess ice streams, must be set before initial conditions
#
my ($opts, $nl_flags, $definition, $defaults, $nl, $physv) = @_;
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'use_excess_ice', 'phys'=>$physv->as_string());
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'use_excess_ice', 'phys'=>$physv->as_string());
my $use_exice = $nl->get_value( 'use_excess_ice' );
# Put use_exice into nl_flags so can be referenced later
if ( value_is_true($use_exice) ) {
Expand Down
2 changes: 1 addition & 1 deletion cime_config/config_component.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -256,7 +256,7 @@
<value compset="_CLM[^_]*%SP" >-bgc sp</value>
<value compset="_CLM[^_]*BGC" >-bgc bgc</value>
<value compset="_CLM[^_]*BGC-CROP" >-bgc bgc -crop</value>
<value compset="_CLM[^_]*FATES" >-bgc fates</value>
<value compset="_CLM[^_]*FATES" >-bgc fates -nomeg</value>
<value compset="_CLM[^_]*FATES-SP" >-bgc fates</value>
<value compset="_CLM[^_]*FATES-NOCOMP">-bgc fates</value>

Expand Down
70 changes: 35 additions & 35 deletions cime_config/testdefs/testlist_clm.xml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -161,7 +161,7 @@
<option name="comment">CESM3 development Exact restart test for all startup types at the standard coupled resolution</option>
</options>
</test>
<test name="SMS_Lm1" grid="ne30pg3_t232" compset="I1850Clm60BgcCropG" testmods="clm/clm60cam7LndTuningMode">
<test name="SMS_Ld31" grid="ne30pg3_t232" compset="I1850Clm60BgcCropG" testmods="clm/clm60cam7LndTuningMode">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
<machine name="derecho" compiler="intel" category="ctsm_sci"/>
Expand Down Expand Up @@ -415,7 +415,7 @@
<option name="comment" >Include an excess ice test starting up from streams</option>
</options>
</test>
<test name="SMS_Lm12" grid="f09_f09_mg17" compset="I1850Clm60Sp" testmods="clm/ExcessIceStartup_output_sp_exice">
<test name="SMS_Ly1" grid="f09_f09_mg17" compset="I1850Clm60Sp" testmods="clm/ExcessIceStartup_output_sp_exice">
<machines>
<machine name="derecho" compiler="intel" category="ctsm_sci"/>
</machines>
Expand Down Expand Up @@ -865,7 +865,7 @@
<option name="comment" >Run soil matrix solution without CN matrix with debug on and the extra options that it interacts with (isotopes and crop)</option>
</options>
</test>
<test name="ERS_Lm13" grid="f10_f10_mg37" compset="I1850Clm60Bgc" testmods="clm/monthly_matrixcn_fast_spinup">
<test name="ERS_Ld396" grid="f10_f10_mg37" compset="I1850Clm60Bgc" testmods="clm/monthly_matrixcn_fast_spinup">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
<machine name="izumi" compiler="intel" category="aux_clm"/>
Expand All @@ -875,7 +875,7 @@
<option name="comment" >Run matrix solution fast spinup for restart beyond a year (to trigger next year logic) turning off extra options to make faster (so without crop or isotopes). This test would've caught a previous bug.</option>
</options>
</test>
<test name="SMS_Lm1" grid="f10_f10_mg37" compset="I1850Clm60Bgc" testmods="clm/clm60_monthly_matrixcn_soilCN30">
<test name="SMS_Ld31" grid="f10_f10_mg37" compset="I1850Clm60Bgc" testmods="clm/clm60_monthly_matrixcn_soilCN30">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
</machines>
Expand Down Expand Up @@ -914,7 +914,7 @@
<option name="comment" >Run without DEBUG for a long period for a single-point case with the matrix solution on for spinup with all options it interacts with (requires Bgc, but also turn on Crop and Carbon isotopes)</option>
</options>
</test>
<test name="LCISO_Lm13" grid="f10_f10_mg37" compset="I1850Clm50BgcCrop" testmods="clm/ciso_monthly_matrixcn_spinup">
<test name="LCISO_Ld396" grid="f10_f10_mg37" compset="I1850Clm50BgcCrop" testmods="clm/ciso_monthly_matrixcn_spinup">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
<machine name="derecho" compiler="intel" category="matrixcn"/>
Expand Down Expand Up @@ -1447,7 +1447,7 @@
<option name="wallclock">00:20:00</option>
</options>
</test>
<test name="ERP_P64x2_Lm13" grid="f10_f10_mg37" compset="IHistClm60Bgc" testmods="clm/monthly">
<test name="ERP_P64x2_Ld396" grid="f10_f10_mg37" compset="IHistClm60Bgc" testmods="clm/monthly">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
<machine name="derecho" compiler="gnu" category="aux_clm"/>
Expand All @@ -1457,7 +1457,7 @@
<option name="tput_tolerance">0.5</option>
</options>
</test>
<test name="ERP_P64x2_Lm13" grid="f10_f10_mg37" compset="IHistClm60Bgc" testmods="clm/monthly--clm/matrixcnOn_ignore_warnings">
<test name="ERP_P64x2_Ld396" grid="f10_f10_mg37" compset="IHistClm60Bgc" testmods="clm/monthly--clm/matrixcnOn_ignore_warnings">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
<machine name="derecho" compiler="intel" category="matrixcn"/>
Expand All @@ -1468,7 +1468,7 @@
<option name="comment" >Repeat ERP_P64x2_Lm13...monthly test with matrixcnOn</option>
</options>
</test>
<test name="REP_P64x2_Lm13" grid="f10_f10_mg37" compset="IHistClm60Bgc" testmods="clm/monthly--clm/matrixcnOn_ignore_warnings">
<test name="REP_P64x2_Ld396" grid="f10_f10_mg37" compset="IHistClm60Bgc" testmods="clm/monthly--clm/matrixcnOn_ignore_warnings">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
<machine name="derecho" compiler="intel" category="matrixcn"/>
Expand Down Expand Up @@ -1528,7 +1528,7 @@
<option name="wallclock">00:20:00</option>
</options>
</test>
<test name="ERP_P64x2_Lm25" grid="f10_f10_mg37" compset="I2000Clm60BgcCrop" testmods="clm/monthly">
<test name="ERP_P64x2_Ld761" grid="f10_f10_mg37" compset="I2000Clm60BgcCrop" testmods="clm/monthly">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
</machines>
Expand Down Expand Up @@ -1564,7 +1564,7 @@
<option name="comment" >Want a multi-year global crop restart test; this was 5 years when we were doing cold start, but 3 years is probably sufficient given that we have spun-up crop initial conditions</option>
</options>
</test>
<test name="ERP_P64x2_Lm36" grid="f10_f10_mg37" compset="I2000Clm50BgcCrop" testmods="clm/clm50cropIrrigMonth_interp">
<test name="ERP_P64x2_Ly3" grid="f10_f10_mg37" compset="I2000Clm50BgcCrop" testmods="clm/clm50cropIrrigMonth_interp">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
<machine name="derecho" compiler="intel" category="prebeta"/>
Expand Down Expand Up @@ -1939,7 +1939,7 @@
<option name="comment" >Include one LVG debug test (exact configuration is not very important). Note that the LVG test will fail if there is any 1-d output, or output separated by glacier elevation classes (e.g., the various *_FORC fields), so this includes a testmod that turns off any 1-d output.</option>
</options>
</test>
<test name="LCISO_Lm13" grid="f10_f10_mg37" compset="IHistClm60BgcCrop" testmods="clm/ciso_monthly">
<test name="LCISO_Ld396" grid="f10_f10_mg37" compset="IHistClm60BgcCrop" testmods="clm/ciso_monthly">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
<machine name="derecho" compiler="intel" category="prebeta"/>
Expand All @@ -1949,7 +1949,7 @@
<option name="comment" >Make sure Carbon isotopes on and off with land-use change, does NOT change answers. To verify for landuse change must go beyond a year boundary, because of #404 we can't use a December start, so need to run for beyond the year boundary.</option>
</options>
</test>
<test name="LCISO_Lm13" grid="f10_f10_mg37" compset="IHistClm60BgcCrop" testmods="clm/ciso_monthly--clm/matrixcnOn_ignore_warnings">
<test name="LCISO_L396" grid="f10_f10_mg37" compset="IHistClm60BgcCrop" testmods="clm/ciso_monthly--clm/matrixcnOn_ignore_warnings">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
<machine name="derecho" compiler="intel" category="prebeta"/>
Expand Down Expand Up @@ -2360,7 +2360,7 @@
</options>
</test>

<test name="ERS_P128x1_Lm25" grid="f10_f10_mg37" compset="I2000Clm60Fates" testmods="clm/FatesColdNoComp">
<test name="ERS_P128x1_Ld761" grid="f10_f10_mg37" compset="I2000Clm60Fates" testmods="clm/FatesColdNoComp">
<machines>
<!-- no izumi tests since this has a pe layout specific for derecho -->
<machine name="derecho" compiler="intel" category="aux_clm"/>
Expand Down Expand Up @@ -2426,7 +2426,7 @@
<option name="comment" >Want a debug test that tests a number of aspects of transient crops, including a new crop landunit and shifting PCT_CFT; move to CLM50 once we can get it fast enough (see bug 2391)</option>
</options>
</test>
<test name="ERS_Lm25" grid="1x1_smallvilleIA" compset="IHistClm50BgcCropQianRs" testmods="clm/smallville_dynlakes_monthly">
<test name="ERS_Ld761" grid="1x1_smallvilleIA" compset="IHistClm50BgcCropQianRs" testmods="clm/smallville_dynlakes_monthly">
<machines>
<machine name="derecho" compiler="gnu" category="aux_clm"/>
</machines>
Expand All @@ -2435,7 +2435,7 @@
<option name="comment">Include a test of transient lakes</option>
</options>
</test>
<test name="ERS_Lm25" grid="1x1_smallvilleIA" compset="IHistClm50BgcCropQianRs" testmods="clm/smallville_dynurban_monthly">
<test name="ERS_Ld761" grid="1x1_smallvilleIA" compset="IHistClm50BgcCropQianRs" testmods="clm/smallville_dynurban_monthly">
<machines>
<machine name="derecho" compiler="gnu" category="aux_clm"/>
</machines>
Expand Down Expand Up @@ -2579,7 +2579,7 @@
<option name="comment">Repeat nlevgrnd_small test with matrixcnOn</option>
</options>
</test>
<test name="SMS_Lm13_PS" grid="f19_g17" compset="I2000Clm60BgcCrop" testmods="clm/cropMonthOutput">
<test name="SMS_Ld396_PS" grid="f19_g17" compset="I2000Clm60BgcCrop" testmods="clm/cropMonthOutput">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
</machines>
Expand Down Expand Up @@ -2754,15 +2754,15 @@
<option name="wallclock">00:40:00</option>
</options>
</test>
<test name="ERS_Lm13" grid="f10_f10_mg37" compset="I2000Clm50Fates" testmods="clm/FatesCold">
<test name="ERS_Ld396" grid="f10_f10_mg37" compset="I2000Clm50Fates" testmods="clm/FatesCold">
<machines>
<machine name="derecho" compiler="gnu" category="fates"/>
</machines>
<options>
<option name="wallclock">00:50:00</option>
</options>
</test>
<test name="ERS_Lm13" grid="f45_f45_mg37" compset="I2000Clm50Fates" testmods="clm/FatesColdNoComp">
<test name="ERS_Ld396" grid="f45_f45_mg37" compset="I2000Clm50Fates" testmods="clm/FatesColdNoComp">
<machines>
<machine name="derecho" compiler="intel" category="fates"/>
</machines>
Expand Down Expand Up @@ -3303,7 +3303,7 @@
<option name="comment" >Run a short non-Fates test (without land-ice model) in the fates test list, to make sure fates changes do not mess up the standard model</option>
</options>
</test>
<test name="SMS_Lm13" grid="1x1_brazil" compset="I2000Clm50FatesCruRsGs" testmods="clm/FatesCold">
<test name="SMS_Ld396" grid="1x1_brazil" compset="I2000Clm50FatesCruRsGs" testmods="clm/FatesCold">
<machines>
<machine name="derecho" compiler="intel" category="fates"/>
<machine name="derecho" compiler="gnu" category="fates"/>
Expand All @@ -3313,7 +3313,7 @@
<option name="comment">13 month single site FATES smoke test.</option>
</options>
</test>
<test name="ERS_Lm12" grid="1x1_brazil" compset="I2000Clm50FatesCruRsGs" testmods="clm/FatesFireLightningPopDens">
<test name="ERS_Ly1" grid="1x1_brazil" compset="I2000Clm50FatesCruRsGs" testmods="clm/FatesFireLightningPopDens">
<machines>
<machine name="derecho" compiler="intel" category="fates"/>
</machines>
Expand Down Expand Up @@ -3782,7 +3782,7 @@

<!-- FATES-NOCOMP -->

<test name="ERS_Lm25" grid="ne30pg3_ne30pg3_mtn14" compset="2000_DATM%GSWP3v1_CLM60%FATES-NOCOMP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/FatesColdNoComp">
<test name="ERS_Ld761" grid="ne30pg3_ne30pg3_mtn14" compset="2000_DATM%GSWP3v1_CLM60%FATES-NOCOMP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/FatesColdNoComp">
<machines>
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
Expand All @@ -3791,7 +3791,7 @@
<option name="comment">""</option>
</options>
</test>
<test name="ERS_Lm25" grid="f45_f45_mg37" compset="2000_DATM%GSWP3v1_CLM60%FATES-NOCOMP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm-FatesColdTwoStreamNoCompFixedBioGeo">
<test name="ERS_Ld761" grid="f45_f45_mg37" compset="2000_DATM%GSWP3v1_CLM60%FATES-NOCOMP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm-FatesColdTwoStreamNoCompFixedBioGeo">
<machines>
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
Expand All @@ -3812,7 +3812,7 @@

<!-- FATES-FULL -->

<test name="ERP_D" grid="f19_g17" compset="2000_DATM%GSWP3v1_CLM60%FATES_SICE_SOCN_SROF_SGLC_SWAV" testmods="clm/FatesCold">
<test name="ERP_D" grid="f45_f45_mg37" compset="2000_DATM%GSWP3v1_CLM60%FATES_SICE_SOCN_SROF_SGLC_SWAV" testmods="clm/FatesCold">
<machines>
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
Expand Down Expand Up @@ -3851,7 +3851,7 @@
<option name="comment">""</option>
</options>
</test>
<test name="ERP_D_Ld5" grid="ne30pg3_ne30pg3_mtn14" compset="HIST_DATM%GSWP3v1_CLM60%SP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/default">
<test name="ERP_D_Ld5" grid="f45_f45_mg37" compset="HIST_DATM%GSWP3v1_CLM60%SP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/default">
<machines>
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
Expand All @@ -3860,7 +3860,7 @@
<option name="comment">""</option>
</options>
</test>
<test name="ERS_D" grid="ne30pg3_ne30pg3_mtn14" compset="1850_DATM%GSWP3v1_CLM60%SP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/default">
<test name="ERS_D" grid="f45_f45_mg37" compset="1850_DATM%GSWP3v1_CLM60%SP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/default">
<machines>
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
Expand All @@ -3872,7 +3872,7 @@

<!-- BGC tests -->

<test name="ERI_D_Ld9" grid="ne30pg3_ne30pg3_mtn14" compset="1850_DATM%GSWP3v1_CLM60%BGC_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/default">
<test name="ERI_D_Ld9" grid="f45_f45_mg37" compset="1850_DATM%GSWP3v1_CLM60%BGC_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/default">
<machines>
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
Expand All @@ -3882,7 +3882,7 @@
</options>
</test>

<test name="ERP_D" grid="ne30pg3_ne30pg3_mtn14" compset="HIST_DATM%GSWP3v1_CLM60%BGC_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/decStart">
<test name="ERP_D" grid="f45_f45_mg37" compset="HIST_DATM%GSWP3v1_CLM60%BGC_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/decStart">
<machines>
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
Expand All @@ -3892,19 +3892,19 @@
</options>
</test>

<test name="ERP_Ld731" grid="ne30pg3_ne30pg3_mtn14" compset="HIST_DATM%GSWP3v1_CLM60%BGC_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/monthly">
<test name="ERP_Ld761" grid="f45_f45_mg37" compset="HIST_DATM%GSWP3v1_CLM60%BGC_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/monthly">
<machines>
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
<options>
<option name="wallclock">00:30:00</option>
<option name="wallclock">00:50:00</option>
<option name="comment">""</option>
</options>
</test>

<!-- BGCCrop tests -->

<test name="ERI_Ld9" grid="ne30pg3_ne30pg3_mtn14" compset="2000_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/default">
<test name="ERI_Ld9" grid="f45_f45_mg37" compset="2000_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/default">
<machines>
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
Expand All @@ -3914,12 +3914,12 @@
</options>
</test>

<test name="ERP_D_Ld10" grid="ne30pg3_ne30pg3_mtn14" compset="HIST_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/default">
<test name="ERP_D_Ld10" grid="f45_f45_mg37" compset="HIST_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/default">
<machines>
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
<options>
<option name="wallclock">00:20:00</option>
<option name="wallclock">00:50:00</option>
<option name="comment">""</option>
</options>
</test>
Expand All @@ -3939,12 +3939,12 @@
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
<options>
<option name="wallclock">00:20:00</option>
<option name="wallclock">00:50:00</option>
<option name="comment">""</option>
</options>
</test>

<test name="ERP_D_Ld5" grid="ne30pg3_ne30pg3_mtn14" compset="2000_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/irrig_spunup">
<test name="ERP_D_Ld5" grid="f45_f45_mg37" compset="2000_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/irrig_spunup">
<machines>
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
Expand All @@ -3964,7 +3964,7 @@
</options>
</test>

<test name="ERP_D_Ld10" grid="ne30pg3_ne30pg3_mtn14" compset="1850_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/ADspinup">
<test name="ERP_D_Ld10" grid="f45_f45_mg37" compset="1850_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV" testmods="clm/ADspinup">
<machines>
<machine name="betzy" compiler="intel" category="aux_clm_noresm"/>
</machines>
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